Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1050 ATGGTGACGGCTAATTGTGTTAGGAAAACTCTCCAAGTAGCTTCAGCTTCTACAAGAACCCTTTTGTCTCGTCAATCTTCACCTCCTTCTGCTTCATATGCTGCTAAAATCAATGCCCTACCTTCTTCTCCTAAATTTTCTACCCAGAAGCGATCACTTTCGTTTTCTTGGCTTCCGGTGCAGTTAGCTAGTGTAGAAGTGTCCTTGACACCATTGCATATAACAATTGGGGTTGTCTCTCAGAAGGTTTTGCAACACCTCTATAGCATCATGCCTATCAGCCTATGGTATCTTGCATTTTGGCCAACCAGATACCATAAGGTTGCAGGGATGGTGGCAGAAGAGAACGTAGTTGAGTCCAGTGATTTTGCAGTGAAAGAAAACGCAGAAAATGGTGTTGGTGTCTCTGCTTCTACCAATGACCCTAATGCCATATCATCTATTATTCCTGGCTGGTTCTCTGAAATCAGTCCAATGTGGCCTGGGGAGGCACACTCCTTGAAGGTGGAAAAGATTTTGTTTGAAGGAAAGTCTGAATACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGAAAGGTTCTTGTTTTGGATGGAGTCATCCAGCTCACTGAAAGGGATGAATGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCGATTCCAAATCCCAAAAAGGTTTTGGTCATTGGCGGAGGAGACGGTGGAGTTCTGCGGGAAGTAGCACGGCATAATTCAGTAGAAAAGATAGACATTTGCGAAATTGACAAGATGGTTGTTGATGTGTCCAAGCAATTTTTCCCTGATGTAGCAGTAGGGTATGAAGACAAACGTGTGACACTCCATATTGGTGATGGAGTTGCATTCTTGAAGGCAGTTCCACAAGGAACTTATGACGCGGTTATCGTGGATTCATCTGACCCAATTGGTCCTGCTCAAGAGCTATTTGAAAAGCCTTTTTTTGAGTCGATTGCAAGGGCTCTTATTCCTGGAGGAGTGGTGTGTACTCAAGCAGAAAGTATATGGCTTCATATGCATATCATTGAGGATATTGTGGCAAATTGTCGCCATATATTCAAAGGTTCTGTCAACTATGCTTGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACCGAGGGACCTTCAGTCGATTTCAAGCATCCAGTGAATCCCATTGATAGCGAGATCTCAGCAAAGCCATTGAAATTTTACAACTCTGAGCTTCATACAGCAGCTTTCTGTTTGCCATCTTTTGCTAAAAAGGCGATCGGTTCTAAAGCAAATTGA 1314 0.433 MVTANCVRKTLQVASASTRTLLSRQSSPPSASYAAKINALPSSPKFSTQKRSLSFSWLPVQLASVEVSLTPLHITIGVVSQKVLQHLYSIMPISLWYLAFWPTRYHKVAGMVAEENVVESSDFAVKENAENGVGVSASTNDPNAISSIIPGWFSEISPMWPGEAHSLKVEKILFEGKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHNSVEKIDICEIDKMVVDVSKQFFPDVAVGYEDKRVTLHIGDGVAFLKAVPQGTYDAVIVDSSDPIGPAQELFEKPFFESIARALIPGGVVCTQAESIWLHMHIIEDIVANCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDSEISAKPLKFYNSELHTAAFCLPSFAKKAIGSKAN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1050 437 TIGRFAM speE: spermidine synthase 152 427 IPR001045 GO:0003824
Lal23g1050 437 CDD AdoMet_MTases 228 339 - -
Lal23g1050 437 Gene3D Spermidine synthase, tetramerisation domain 144 202 IPR037163 -
Lal23g1050 437 Gene3D Vaccinia Virus protein VP39 203 437 IPR029063 -
Lal23g1050 437 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 150 387 IPR030374 -
Lal23g1050 437 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 148 433 IPR029063 -
Lal23g1050 437 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 229 242 IPR030373 -
Lal23g1050 437 Pfam Spermidine synthase tetramerisation domain 151 205 IPR035246 -
Lal23g1050 437 Pfam Spermine/spermidine synthase domain 208 395 - -
Lal23g1050 437 PANTHER SPERMIDINE SYNTHASE-RELATED 113 437 - -
Lal23g1050 437 Hamap Polyamine aminopropyltransferase [speE]. 151 433 IPR001045 GO:0003824
Lal23g1050 437 PANTHER SPERMIDINE/SPERMINE SYNTHASE 113 437 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1050 Lal-Chr23 12250822 12261017 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1050 K00797 - gmx:100812978 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1050 23 12250822 12261017 Lal23g1050 23 12250822 12261017 ECH
Lal16g0547 16 3503226 3506582 Lal23g1050 23 12250822 12261017 LSH
Lal15g0491 15 3372803 3376611 Lal23g1050 23 12250822 12261017 LSH
Lal14g0929 14 11654805 11655980 Lal23g1050 23 12250822 12261017 LSH