Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0547 ATGGCGGCAGAAGAGAGCGTAGTTGTGTCCAACGATTTCCCACTCAATAATCACAAACAGAACAGTGTTGTCTCTGCTTCTACCAATGACCCTAATGCCATATCTTCTGTTATTCCTGGCTGGTTTTCTGAAATCAGTCCAATGTGGCCTGGGGAGGCACACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGAATACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACTGAAAGGGATGAATGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCAAATCCGAAAAAGGTGTTGGTCATTGGTGGAGGAGATGGTGGTGTTCTGCGGGAAGTAGCACGTCATTCTTCAGTAGAAAAGATAGACATTTGCGAAATTGACAAGATGGTTGTTGATGTCTCTAAGCAATTTTTCCCTGATGTAGCAGTAGGGTATGAAGACAAACGCGTGACACTCCATGTTGGTGATGGAGTTGCATTCTTGAAGGCAGTTCCAGAAGGAACTTATGATGCGGTTATCGTGGATTCGTCTGACCCTATTGGTCCCGCTAAAGAGCTTTTTGAAAAGCCTTTTTTCGAGTCGGTTGCAAGGGCTCTTCGTCCGGGAGGAGTGGTGTGTACTCAAGCAGAAAGTATATGGCTTCATATGCATATCATTGAGGATATTGTGGAAAATTGTCGCCAGATATTCAAAGGTTCTGTCAACTATGCTTGGACCACAGTTCCTACATATCCTAGTGGGATGATTGGTTTTATGGTTTGCTCAACTGAGGGGCCTGCTGTTGATTTCAAGCATCCAGTGAATCCCATTGATGTAAATGATTCTCAGCATTCAGCAAGACCACTGAAATTTTACAACTCTGAGCTTCATACAGCAGCTTTCTGTTTGCCATCTTTTGCTAAGAAAGCAATTGGTTCTAAAGCAAATTGA 990 0.4323 MAAEESVVVSNDFPLNNHKQNSVVSASTNDPNAISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVVDVSKQFFPDVAVGYEDKRVTLHVGDGVAFLKAVPEGTYDAVIVDSSDPIGPAKELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVENCRQIFKGSVNYAWTTVPTYPSGMIGFMVCSTEGPAVDFKHPVNPIDVNDSQHSARPLKFYNSELHTAAFCLPSFAKKAIGSKAN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0547 329 PIRSF Spermidine_synth 29 329 IPR030668 GO:0006595
Lal16g0547 329 Gene3D Spermidine synthase, tetramerisation domain 33 91 IPR037163 -
Lal16g0547 329 PANTHER SPERMIDINE SYNTHASE-RELATED 4 329 - -
Lal16g0547 329 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 118 131 IPR030373 -
Lal16g0547 329 Gene3D Vaccinia Virus protein VP39 92 329 IPR029063 -
Lal16g0547 329 Pfam Spermidine synthase tetramerisation domain 40 94 IPR035246 -
Lal16g0547 329 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 37 325 IPR029063 -
Lal16g0547 329 TIGRFAM speE: spermidine synthase 41 319 IPR001045 GO:0003824
Lal16g0547 329 PANTHER SPERMIDINE/SPERMINE SYNTHASE 4 329 IPR001045 GO:0003824
Lal16g0547 329 Pfam Spermine/spermidine synthase domain 97 284 - -
Lal16g0547 329 Hamap Polyamine aminopropyltransferase [speE]. 40 325 IPR001045 GO:0003824
Lal16g0547 329 CDD AdoMet_MTases 117 228 - -
Lal16g0547 329 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 39 276 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0547 Lal-Chr16 3503226 3506582 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0547 K00797 - gmx:100790506 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0547 16 3503226 3506582 Lal16g0547 16 3503226 3506582 ECH
Lal16g0547 16 3503226 3506582 Lal15g0491 15 3372803 3376611 LSH
Lal16g0547 16 3503226 3506582 Lal23g1050 23 12250822 12261017 LSH