Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0491 ATGGCGGCAGAAGAAAGCGTTGTTAACACTATCGATTTTCCAGTGAAGAGGCAAAGGGAAAACGAAGAAAACGGTGCTGTCTCTGTTTCTAACGACCCTAATGGCATTTCAGCTGTTATTCCTGGCTGGTTTTCTGAAATCAGTCCAATGTGGCCTGGGGAGGCACACTCCTTAAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGATTACCAGAATGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATCCCAAACCCCAAAAAGGTTTTGGTCATTGGTGGAGGAGATGGTGGAGTTCTGCGAGAAGTAGCACGCCATTCTTCAGTAGAAAAGATAGACATTTGTGAAATTGACAAGATGGTTATTGATGTCTCCAAAGAATTTTTCCCTGATATAGCAGTAGGGTATGAGGACAAACGTGTGACACTTCATGTTGGTGATGGAGTTGCATTTCTGAAAGCAGTTCCTCAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGACCCGATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTTTTTGAGTCAATTGCAAGGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAAGCTGAAAGTATATGGCTTCATATGCATATCATCGAGGACATTGTGGCAAATTGTCGCGAAATATTCAAAGGTTCTGTCAACTATGCTTGGACCACAGTCCCCACATACCCAAGTGGGATGATTGGTTTTATGGTTTGTTCCACTGAGGGTCCTGCTGTTGATTTCAATCATCCAATTAATCCCATAGATGAAAATGATAGTCAACATTCAACAAGACCACTGAAATTTTACAATTCTGAGCTTCATACAGCAGCTTTCTGTTTGCCATCTTTTGCCAAGAAGGCAATTGATTCTAAAGCACATTAA 996 0.4197 MAAEESVVNTIDFPVKRQRENEENGAVSVSNDPNGISAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDKMVIDVSKEFFPDIAVGYEDKRVTLHVGDGVAFLKAVPQGTYDAVIVDSSDPIGPAQELFEKPFFESIARALRPGGVVCTQAESIWLHMHIIEDIVANCREIFKGSVNYAWTTVPTYPSGMIGFMVCSTEGPAVDFNHPINPIDENDSQHSTRPLKFYNSELHTAAFCLPSFAKKAIDSKAH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0491 331 Gene3D Vaccinia Virus protein VP39 94 331 IPR029063 -
Lal15g0491 331 Hamap Polyamine aminopropyltransferase [speE]. 42 327 IPR001045 GO:0003824
Lal15g0491 331 CDD AdoMet_MTases 119 230 - -
Lal15g0491 331 Gene3D Spermidine synthase, tetramerisation domain 35 93 IPR037163 -
Lal15g0491 331 PIRSF Spermidine_synth 32 331 IPR030668 GO:0006595
Lal15g0491 331 Pfam Spermine/spermidine synthase domain 99 286 - -
Lal15g0491 331 TIGRFAM speE: spermidine synthase 43 321 IPR001045 GO:0003824
Lal15g0491 331 Pfam Spermidine synthase tetramerisation domain 42 96 IPR035246 -
Lal15g0491 331 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 41 278 IPR030374 -
Lal15g0491 331 PANTHER SPERMIDINE SYNTHASE-RELATED 3 330 - -
Lal15g0491 331 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 39 327 IPR029063 -
Lal15g0491 331 PANTHER SPERMIDINE/SPERMINE SYNTHASE 3 330 IPR001045 GO:0003824
Lal15g0491 331 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 120 133 IPR030373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0491 Lal-Chr15 3372803 3376611 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0491 K00797 - pop:7459055 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0491 15 3372803 3376611 Lal15g0491 15 3372803 3376611 ECH
Lal16g0547 16 3503226 3506582 Lal15g0491 15 3372803 3376611 LSH
Lal15g0491 15 3372803 3376611 Lal23g1050 23 12250822 12261017 LSH