Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1045 ATGCTATGCTCTCTAATCCGTTTCCGCCGTTACGTTTCATCCATTCAACTTTCTAACACTCTTTTCCTCACTAACCGTTTCTCCCTCTCCACCTCACCATCATCCTCCTCCGCCGCTATGGTTGCTCATCCCAAAGACGCGGCGTACCTCACCGCCGTTATCCCCAAACGCATCAAGCTCTTCGAGGAAATCCAGTTTGAACAGCAAACCAAACTCCTCTCCCTCTCTCATGATCCAATCAAGGTCACTCTCCCTGATGGTACCGTTAAGGAAGCCAAGAAATGGCTCACAACTCCTCTTGACATCTCTCGTGAAATCTCAAAGAATCTTGCTATCAATGCTCTCATTGCAAGGGTTAATGGTGTTCTATGGGACATGGTGCGTCCTCTTGAGGAAGATTCTCAGCTTCGGATCTATAAATTCGATGACGATGAAGGCCGCGATACTTTCTGGCACTCCAGTGCTCACATTCTTGGCCAGGCTTTGGAATCGGAATATGGATGCAAGTTATGCATTGGGCCATGTACCACAAGAGGAGAGGGATTCTATTATGATGGATTTTATGGAGAATTGGGTCTCAATGATGATCACTTTAAGCAAATTGAGAAAAAGGCTTCCGAAGCTGTTGGGGAAAAACAGCCCTTTGAGCGCATTGAAGTAACACGCGATCAGGCACTAGAGATTTTTTCGGATAATAAGTTTAAGGCAAGTATAGCTATTGAAATTATCAATGATTTACCTGCTGACAAGACCATCACAGTATACAGATGTGGTCCCCTGATTGATTTGTGTCGTGGACCACATATACCTAATACATCCTTTGTCAAAGCAATTGCATGTTTGAAGGCTTCATCAGCATATTGGAGGGGGGACAAGGATCGTGAAAGTTTACAAAGAGTTTATGGGATATCTTACCCTGACCAGAAGAGTTTAAAGCAATATTTGGTTCGACTGGAGGAGGCTAAAAAGTATGACCACAGGATTTTGGGTGTGAAACAGGAGCTCATTTATCATCACGAATGGAGTCCAGGAAGCTGGTTTTTTCTTCCTCATGGTGCACGGATCTACAACAAACTGACTGAGTTCATTCGAAATCAGTATAGAGATAGGGGCTACCAAGAGGTCATATCTCCAAATGTATTTAACATGGATCTTTGGGTGCAATCTGGTCATGCTGCAAATTATAGAGAGGGTATGTTTGTCTTAGAGATTGAAAAACAAGAGTTTGGGCTGAAACCAATGAATTGCCCAGGTCACTGCTTGATGTTTAAACACAGAGTTCGCTCATATAGAGAACTTCCTCTTCGATTTGCTGATTTTGGGGTTTTGCATCGGAATGAGGCTAGTGGTGCGCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGATAAGGGGTGAAGTGAGAAATGCCTTGAATTTTATCAATTATGTTTATGACATATTTGGCTTCACCTACGAGCTCAAGCTTTCAACGAGGCCAGAGAAATACCTAGGGAAGTTGGAAACATGGGACAAGGCTGAAAATGCTCTTAGGGAAGCTTTAGATGAGTTTGGCAAGCCTTGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGCCCAAAGATAGACATCAGTGTATCAGATGCCTTGAATAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTCAACGTTTTGAGTTGGAATTTTCAGCTGAGGATGAAGGCAAAATTGAGAAACCTGTTATGATACACAGAGCCATTCTCGGATCTGTTGAGCGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCCCGTCAAGCTATTCTATGCCCTGTGTCTGAGAAATCACAAGCTTATGCACTGCAGGTGCGAGATCAGATCCACCAAGCAGGGTATCATGTTGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGTGCGAGAAGCTCAGTTAGCACAGTACAACTACATTTTGGTTGTTGGCGAGGAGGAAGCTAATACAGGACAGGTGAGTGTACGGGTTAGAGATAAGGCAGACCATAGAGTTATGAGTGTTGAGAATCTACTCAAACACTTCGGAGAGGAAGTTGCTGCTTTCCATTGA 2124 0.4393 MLCSLIRFRRYVSSIQLSNTLFLTNRFSLSTSPSSSSAAMVAHPKDAAYLTAVIPKRIKLFEEIQFEQQTKLLSLSHDPIKVTLPDGTVKEAKKWLTTPLDISREISKNLAINALIARVNGVLWDMVRPLEEDSQLRIYKFDDDEGRDTFWHSSAHILGQALESEYGCKLCIGPCTTRGEGFYYDGFYGELGLNDDHFKQIEKKASEAVGEKQPFERIEVTRDQALEIFSDNKFKASIAIEIINDLPADKTITVYRCGPLIDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKQYLVRLEEAKKYDHRILGVKQELIYHHEWSPGSWFFLPHGARIYNKLTEFIRNQYRDRGYQEVISPNVFNMDLWVQSGHAANYREGMFVLEIEKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQIRGEVRNALNFINYVYDIFGFTYELKLSTRPEKYLGKLETWDKAENALREALDEFGKPWQLNEGDGAFYGPKIDISVSDALNRKFQCATLQLDFQLPQRFELEFSAEDEGKIEKPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHRVMSVENLLKHFGEEVAAFH 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1045 707 CDD TGS_ThrRS 80 145 - -
Lal23g1045 707 SUPERFAMILY Class II aaRS and biotin synthetases 325 597 IPR045864 -
Lal23g1045 707 SUPERFAMILY Class II aaRS ABD-related 598 703 - -
Lal23g1045 707 Gene3D - 143 305 - -
Lal23g1045 707 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 42 706 - -
Lal23g1045 707 CDD ThrRS_core 325 610 IPR033728 -
Lal23g1045 707 Hamap Threonine--tRNA ligase [thrS]. 145 705 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lal23g1045 707 Pfam TGS domain 80 140 IPR004095 -
Lal23g1045 707 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 252 301 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lal23g1045 707 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 350 605 IPR006195 -
Lal23g1045 707 Pfam Anticodon binding domain 612 699 IPR004154 -
Lal23g1045 707 Gene3D - 604 706 IPR036621 -
Lal23g1045 707 TIGRFAM thrS: threonine--tRNA ligase 151 699 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lal23g1045 707 PANTHER THREONINE-TRNA LIGASE 42 706 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lal23g1045 707 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 404 600 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lal23g1045 707 Gene3D Bira Bifunctional Protein; Domain 2 307 603 IPR045864 -
Lal23g1045 707 Gene3D - 78 138 IPR012675 -
Lal23g1045 707 SUPERFAMILY ThrRS/AlaRS common domain 142 323 IPR018163 GO:0000166
Lal23g1045 707 SUPERFAMILY TGS-like 80 140 IPR012676 -
Lal23g1045 707 PRINTS Threonyl-tRNA synthetase signature 411 439 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lal23g1045 707 PRINTS Threonyl-tRNA synthetase signature 444 467 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lal23g1045 707 PRINTS Threonyl-tRNA synthetase signature 534 562 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lal23g1045 707 PRINTS Threonyl-tRNA synthetase signature 578 591 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lal23g1045 707 PRINTS Threonyl-tRNA synthetase signature 605 617 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lal23g1045 707 ProSiteProfiles TGS domain profile. 78 140 IPR004095 -
Lal23g1045 707 SMART tRNA_SAD_4 252 301 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lal23g1045 707 CDD ThrRS_anticodon 610 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1045 Lal-Chr23 12201932 12211496 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1045 K01868 - gmx:100812652 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1045 23 12201932 12211496 Lal23g1045 23 12201932 12211496 ECH
Lal16g0551 16 3544749 3555786 Lal23g1045 23 12201932 12211496 LSH
Lal15g0497 15 3430802 3441835 Lal23g1045 23 12201932 12211496 LSH