Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0551 ATGTTTGAATGTACGATCTGCCGTGCATATAAAAAGAAAGACGAGGTTATAGTTCTTCCATTCAACGACTCTCTCACACTCTTCTCCCTCAGTAACCGTTTCTCCTCCTCCACCACCGTCTCCGCCACCGCAATGGCGTACCTAAGCGCCGCTATCCCAAAGCGTATCAAGCTCTTCGATGAAATCCACCTTCAGCAGCGAACAAAAAATCCTCTCCCTCGCGAAATCTCCAAGAATCTTGCTAACAATGCTCTCATCGCAAGGGTCAATGGTGTTCTTTGGGATATGGCTCGTCTTCTTGAGGAAGATTCCGAGCTTCGGATATATAAGTTCGATGACGACGAAGGCCGTGATACTTTCTGGCATTCCAGCGCTCACATTCTCGGCCAGGCTTTGGAAGAAGAATATGGATGCAAGATTGCAAGCTATGCATTGGACCCTGTACCACAAGAGGAGAGGTATCTTGGATTCTATTATGATGCGTTTTATGGAGACTTGGGTCTGAATGATGAACACTTTAAGCAAATTGAGAAAAAGCCTTTGGAAGCTGTTGGGGTATTCTTTCGTTCTCTTGTATATATGTCTGCTATGCCTGCTGTTATTCTTACAGCTTCTAGTGCTCCTATTGCTATTGGAATTAGAATTAGAAGTTTGGAATTATGTCTGATTGAAATTATCAATGATTTACCTGCTGACAAGACCATCACAGTATACAGATGTGTCCCCTGGTTGATTTGTGCCGTGGACCACATATACCTAATACATCCTTTGTCAAAGCAATGGCATGCTTCATCAGCATATTGGAAGGTGGACAAGAATCGTGAAAGTTTACAAAGAATGGCATATCTTATCCCGACCAGAAGAATGGATGTTGCAAAAAAATCAATGTACCTCGATGATTCTACAATTCCAGCAAGTTCCATTAGTTACTGCTTGGACGGTGAATACTTGCTCCAGCTGGAGGAGGCTAAAAAGTATGACCACAGGATTTTGGGTGTGAAACAGGAGCTCATTTATCATCATGAATGGAGGAAGCTGGTTTTTTCTAACCCATGGTGCACGGATTTACAACAAACTGATGGATTTCATACGAAATCAGTATAG 1104 0.4284 MFECTICRAYKKKDEVIVLPFNDSLTLFSLSNRFSSSTTVSATAMAYLSAAIPKRIKLFDEIHLQQRTKNPLPREISKNLANNALIARVNGVLWDMARLLEEDSELRIYKFDDDEGRDTFWHSSAHILGQALEEEYGCKIASYALDPVPQEERYLGFYYDAFYGDLGLNDEHFKQIEKKPLEAVGVFFRSLVYMSAMPAVILTASSAPIAIGIRIRSLELCLIEIINDLPADKTITVYRCVPWLICAVDHIYLIHPLSKQWHASSAYWKVDKNRESLQRMAYLIPTRRMDVAKKSMYLDDSTIPASSISYCLDGEYLLQLEEAKKYDHRILGVKQELIYHHEWRKLVFSNPWCTDLQQTDGFHTKSV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0551 367 PANTHER THREONINE-TRNA LIGASE 73 341 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lal16g0551 367 ProSiteProfiles TGS domain profile. 44 110 IPR004095 -
Lal16g0551 367 CDD TGS_ThrRS 74 115 - -
Lal16g0551 367 SUPERFAMILY TGS-like 73 110 IPR012676 -
Lal16g0551 367 Pfam TGS domain 75 110 IPR004095 -
Lal16g0551 367 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 73 341 - -
Lal16g0551 367 Gene3D - 71 113 IPR012675 -
Lal16g0551 367 Gene3D - 114 283 - -
Lal16g0551 367 SUPERFAMILY ThrRS/AlaRS common domain 112 281 IPR018163 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0551 Lal-Chr16 3544749 3555786 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0551 K01868 - gmx:100812652 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0551 16 3544749 3555786 Lal16g0551 16 3544749 3555786 ECH
Lal16g0551 16 3544749 3555786 Lal15g0497 15 3430802 3441835 LSH
Lal16g0551 16 3544749 3555786 Lal23g1045 23 12201932 12211496 LSH