Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal15g0497 | ATGCTATGCTCTCTAACCCATTTCCGCCGTTACGCTGCCTCCATCCAACAACTCTCTCAAACTCTTCTCCTCAGTAACAGTTTCTCCTTCTCCACTTCATCCACCACCGCCACCGTCACCGCCGTCATGGTTCCTCATCCGAAAGACGAGGCGTACCTAAGCGCCGTTATCCCCAAGCGTATCAAGCTCTTCGAGGAAATCCAGATTGAGCAGCGCACAAAACTCCTCTCCCTCGCTCAGAATCCAATCAAGGTCACTCTCCCTGACGGTACCGTGAAGGAAGCGAAGAAGTGGCTCACCACTCCACTCGACGTAGCTCGCGAAATCTCGAAGAATCTCGCTAACACTGCTCTCATCGCAAGGGTCAATGGCGTTCTATGGGACATGACGCGTCCTTTCGAGGAAGATTCTGAGCTTCGGATCTATAAATTTAACGATGACGAAGGCCGCGACACTTTCTGGCATTCCAGCGCTCACATTCTCGGCCAGGGTTTGGAAGGGGAGTATGGATGTAAGCTATGCATTGGGCCATGTACCACGAGAGGAGAGGGATTCTATTATGATGCATTTTATGGAGACTTGGGTCTGAATGATGAACACTTTAAGCAAATTGAGACTGGGGCTTTGAAGGCTGTTGCGATTGAAATTATCAACGATTTGCCACCTGATAAGACTATCACAGTATACAGATGTGGTCCCCTGGTTGATCTGTGTCGTGGACCACATATACCAAATACATCCTTTGTCAAAGCAATCGCTTGTTTAAAGGCGTCATCAGCATATTGGAGGGGGGACAAGAATCGTGAGAGTTTACAAAGAGTTTATGGCATATCTTATCCTGACCAGAAGAGTTTGAAGGAATATTTGGTTCGGCTGGAGGAGGCTAAAAAGTATGACCACAGGATTGTGGGTGTGAAACAAGAGCTCATTTATCACCATGAATGGAGCCCGGGAAGCTGGTTTTTTCTTCCACACGGTGCACGAATCTACAACAAACTGATGGAGTTCATTCGAAATCAGTACAGAGACAGAGGCTATCAAGAGGTCATATCTCCAAATGTATATAACATGGATCTTTGGGTGCAATCTGGTCATGCTGCAAATTATAAAGAGGACATGTTTGTCTTGGAGATTGAGAAACAAGAGTTTGGGCTGAAACCAATGAATTGCCCAGGTCACTGCTTGATGTTTAAACACAGAGTTCGCTCATATAGAGAACTTCCTCTTCGATTTGCTGATTTTGGGGTTTTGCATCGGAATGAGGCTAGTGGTGCTCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGATGATGCACATATCTTCTGCAGGGAGTCCCAGATTAAGGATGAAGTGAGAAATGCCTTGAATTTCATCAATTATGTCTATGACATATTTGGCTTTACATATGAGCTGAAGCTTTCAACGAGGCCAGAGAAATACCTAGGTGATTTGGAAACATGGGACAAAGCTGAAAATGCTCTTAAAGAAGCTTTAGATGAGTTTGGCAAACCTTGGCAGTTGAACGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCCTTGAATAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTAATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTTATGATACACAGAGCCATTCTTGGATCTGTTGAGCGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCGATTTTATGCCCCGTGTCAGAGAAATCACAAGCTTATGCACTGAAGGTGCGTGATCAGCTTCACCAAGCAGGGTATCATGTTGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGTGCGAGAAGCTCAGTTAGCACAGTACAACTACATCTTGGTTGTTGGTGAGGAGGAAGCTAATACAGGACAGGTGAGTGTACGGGTTAGAGACAAGGCAGACCATAGCGTTATGAGTATTGAGAACCTACTCAAACACTTCAGAGACGAGGTTGCAGCTTTCCATTGA | 2079 | 0.4541 | MLCSLTHFRRYAASIQQLSQTLLLSNSFSFSTSSTTATVTAVMVPHPKDEAYLSAVIPKRIKLFEEIQIEQRTKLLSLAQNPIKVTLPDGTVKEAKKWLTTPLDVAREISKNLANTALIARVNGVLWDMTRPFEEDSELRIYKFNDDEGRDTFWHSSAHILGQGLEGEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDEHFKQIETGALKAVAIEIINDLPPDKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKNRESLQRVYGISYPDQKSLKEYLVRLEEAKKYDHRIVGVKQELIYHHEWSPGSWFFLPHGARIYNKLMEFIRNQYRDRGYQEVISPNVYNMDLWVQSGHAANYKEDMFVLEIEKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNALNFINYVYDIFGFTYELKLSTRPEKYLGDLETWDKAENALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALNRKFQCATLQLDFQLPNRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALKVRDQLHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHSVMSIENLLKHFRDEVAAFH | 692 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal15g0497 | 692 | Pfam | Anticodon binding domain | 597 | 686 | IPR004154 | - | |
| Lal15g0497 | 692 | PANTHER | THREONINE--TRNA LIGASE, CYTOPLASMIC | 213 | 691 | - | - | |
| Lal15g0497 | 692 | PANTHER | THREONINE--TRNA LIGASE, CYTOPLASMIC | 45 | 213 | - | - | |
| Lal15g0497 | 692 | SMART | tRNA_SAD_4 | 226 | 275 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Lal15g0497 | 692 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 324 | 590 | IPR006195 | - | |
| Lal15g0497 | 692 | CDD | ThrRS_core | 299 | 595 | IPR033728 | - | |
| Lal15g0497 | 692 | PRINTS | Threonyl-tRNA synthetase signature | 385 | 413 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lal15g0497 | 692 | PRINTS | Threonyl-tRNA synthetase signature | 418 | 441 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lal15g0497 | 692 | PRINTS | Threonyl-tRNA synthetase signature | 519 | 547 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lal15g0497 | 692 | PRINTS | Threonyl-tRNA synthetase signature | 563 | 576 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lal15g0497 | 692 | PRINTS | Threonyl-tRNA synthetase signature | 590 | 602 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lal15g0497 | 692 | CDD | TGS_ThrRS | 83 | 148 | - | - | |
| Lal15g0497 | 692 | Pfam | TGS domain | 83 | 143 | IPR004095 | - | |
| Lal15g0497 | 692 | Gene3D | - | 147 | 280 | - | - | |
| Lal15g0497 | 692 | Gene3D | Bira Bifunctional Protein; Domain 2 | 281 | 588 | IPR045864 | - | |
| Lal15g0497 | 692 | SUPERFAMILY | Class II aaRS ABD-related | 583 | 688 | - | - | |
| Lal15g0497 | 692 | Gene3D | - | 212 | 239 | - | - | |
| Lal15g0497 | 692 | ProSiteProfiles | TGS domain profile. | 81 | 143 | IPR004095 | - | |
| Lal15g0497 | 692 | Gene3D | - | 589 | 691 | IPR036621 | - | |
| Lal15g0497 | 692 | CDD | ThrRS_anticodon | 595 | 685 | - | - | |
| Lal15g0497 | 692 | Hamap | Threonine--tRNA ligase [thrS]. | 148 | 690 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lal15g0497 | 692 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 378 | 585 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Lal15g0497 | 692 | Gene3D | - | 81 | 141 | IPR012675 | - | |
| Lal15g0497 | 692 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 226 | 275 | IPR012947 | GO:0004812|GO:0005524|GO:0043039 | |
| Lal15g0497 | 692 | SUPERFAMILY | ThrRS/AlaRS common domain | 145 | 297 | IPR018163 | GO:0000166 | |
| Lal15g0497 | 692 | TIGRFAM | thrS: threonine--tRNA ligase | 212 | 687 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lal15g0497 | 692 | PANTHER | THREONINE-TRNA LIGASE | 213 | 691 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lal15g0497 | 692 | PANTHER | THREONINE-TRNA LIGASE | 45 | 213 | IPR002320 | GO:0004829|GO:0005524|GO:0005737|GO:0006435 | |
| Lal15g0497 | 692 | SUPERFAMILY | Class II aaRS and biotin synthetases | 299 | 582 | IPR045864 | - | |
| Lal15g0497 | 692 | SUPERFAMILY | TGS-like | 83 | 143 | IPR012676 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal15g0497 | Lal-Chr15 | 3430802 | 3441835 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal15g0497 | K01868 | - | gmx:100812652 | 1228.77 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal15g0497 | 15 | 3430802 | 3441835 | Lal15g0497 | 15 | 3430802 | 3441835 | ECH | |
| Lal16g0551 | 16 | 3544749 | 3555786 | Lal15g0497 | 15 | 3430802 | 3441835 | LSH | |
| Lal15g0497 | 15 | 3430802 | 3441835 | Lal23g1045 | 23 | 12201932 | 12211496 | LSH |