Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0683 ATGAATAGAGAAGAAGAAAATGTATCACTACATTCACCATTGGTGCAAATCACAGTGGAAGATAGACTCAAAGATGGTACTTTAGAACCAAACAAGGATAAGAGAATAGAAAGAAGGGAGATCTATGAAGAAGTGAGGAAGCAGTTATGGCTGGCAGGGCCTTTAGTATCTGTGTCACTGTTGAATTATTGCATACAAATTATATCTGTAATGTTTGTGGGCCATCTTGGCCAATTGCCTCTTTCTGCTGCTTCAATGGCTACTTCTTTTGCCTCTGTTACTGGTTTTAGCTTCTTGGTGGGAATGGCTAGTGCATTGGATACTTTATGTGGTCAATCATATGGAGCAAAGCAATATAGTATATTAGGCATACACATGCAGAAAGCCATGCTTGTTCTTATGATTGTTAGCATACCCATTTCAATTATTTGGGCTAACACAAAATCCATTCTAATTGCACTTGGCCAAGATCCTGAAATATCTACAGAAGCTGGAAAATATGCTCAACTAATGATTCCAAGCATTTTTGCCTATGGTCTTCTTCAGTGTCTAAACAGATTCTTGCAGACCCAAAATATTGTATTTCCAATGATGTTAAGTTCAGGGTTTACTACTTTACTGCATATTATTATATGTTGGTTTATGGTATTCAAATCTGGACTAGGGTACAAAGGAGCTGCTATATCAAATGCTATTTCTTATTGGATCAATGTTTTGATTCTGACACTATATGTCAAGTTTTCCCCTTCATGTTTTAAAACTTGGACAGGGTTTTCAAAAGAGGCAATGCATTATATACCTTCTTTTCTGGGGCTTGCCATTCCTTCAGCTATTATGGTTTGCTTGGAAATGTGGTCTTTTGAAATGATGGTTCTACTTTCTGGTCTTCTTCCAAATCCGAAGTTAGAAACATCAGTGCTCTCTATCTGTCTGAATACTTCATCAACCATTTGGATGATACCCTTTGGACTCAGTGGAGCAGTTAGCACTCGTGTCTCAAATGAACTAGGAGCTGGTCATCCAAGGGCTGCACGTTTAGCTGTGTATTTTATCTTTGCAATGGCCACTATTGAGGGCATATTTATTGGAACAGTGATGATATTTATGCGCAATATTTGGGGTTATGCATATACTAATGAAGTAGAAGTGGTCAAATATGTAGCAACCATGTTGCCTATTCTTGCAGCATCCATTTTCCTTGATGGAATCCAATGTGTCCTTTCAGGTATGGCTAGAGGATGTGGTAGGCAAAAAATTGGTGCTTTGATTAATCTAGGATCATATTACTTAATTGGGATTCCATCATCTATATTATTTGCTTTTGTCTTTCACATTGGTGGAAAGGGACTTTGGTTAGGGATCATATGTGCACTCATTGTTCAAGTGTCATGCCTTATGATCATTACAATAAGTACTGATTGGGAATTAGAGGCAAAGAAGGCTAAGGAGAGAGTTTATGATTCAACAAGATCAGAGAACATAGTTTCATGA 1491 0.3763 MNREEENVSLHSPLVQITVEDRLKDGTLEPNKDKRIERREIYEEVRKQLWLAGPLVSVSLLNYCIQIISVMFVGHLGQLPLSAASMATSFASVTGFSFLVGMASALDTLCGQSYGAKQYSILGIHMQKAMLVLMIVSIPISIIWANTKSILIALGQDPEISTEAGKYAQLMIPSIFAYGLLQCLNRFLQTQNIVFPMMLSSGFTTLLHIIICWFMVFKSGLGYKGAAISNAISYWINVLILTLYVKFSPSCFKTWTGFSKEAMHYIPSFLGLAIPSAIMVCLEMWSFEMMVLLSGLLPNPKLETSVLSICLNTSSTIWMIPFGLSGAVSTRVSNELGAGHPRAARLAVYFIFAMATIEGIFIGTVMIFMRNIWGYAYTNEVEVVKYVATMLPILAASIFLDGIQCVLSGMARGCGRQKIGALINLGSYYLIGIPSSILFAFVFHIGGKGLWLGIICALIVQVSCLMIITISTDWELEAKKAKERVYDSTRSENIVS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0683 496 PANTHER PROTEIN DETOXIFICATION 33 484 - -
Lal23g0683 496 CDD MATE_eukaryotic 44 480 IPR045069 GO:0042910|GO:1990961
Lal23g0683 496 Pfam MatE 275 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal23g0683 496 Pfam MatE 54 213 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal23g0683 496 PANTHER MULTIDRUG RESISTANCE PROTEIN 33 484 - -
Lal23g0683 496 TIGRFAM matE: MATE efflux family protein 54 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0683 Lal-Chr23 9524572 9528110 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0683 K03327 - gmx:100792588 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0683 23 9524572 9528110 Lal23g0683 23 9524572 9528110 ECH
Lal8g0458 8 3050541 3053536 Lal23g0683 23 9524572 9528110 PCT
Lal25g0469 25 3239848 3243767 Lal23g0683 23 9524572 9528110 PCT