Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0681 ATGTCATTCCTCCGCAGCTCCTCCGACCGCCGGAAGTCGGCGTCAAAGGCGACCAGAAGCGCCGTTCATGGTGGCGGAAAATCTAAGATTGTCGTTAACCAGAGGCTGCAGTTGAACCCTGACAAGAATCACCAACCGGAATCGTACGAGGACTTGAAATCTAATCATTTCGGCCCTTGGATTTTCCAAGAGCTCGAAAAGCACCTTCCATCGAACATGCTCGACGTTTCTCGCGAGAAAAAGGTTAAGTATATGCGCGGGATCTTGAACGAGTATTTATCTCCCGCAGAAAGTTTCAGGGTACGATTCACTGTTAGATCAGTTGGATTGACTGTCCGGTTTGGTTTTGACAATAGGTCTCAAGGACTAGGTACTCTTGGATGCTCGGAGACAAGGAAAAGTCAAAAGCAAAAGGAGTTCAGGCAGAAAATAATATCAAATTATCCGCCTCTGTATAAAGAGTTGTACACTATGGATCCTACAGCATTCTTTGTCCCGGATTTTCTGAGAGCAATTAATGATAATACAGAAGAAAGCTTTAGACGAATAATGTCTGAGCCTGCTCCAGGCATTTTTGCGTTTGAAATGCTTCAGCCACGCTTTTGCGAGTTATTGATGTCTGAGTTTGACAATTTCGAGAGGTGGGTTCATGACCAAAAAGTTCGAGTTATGCGTCCCAATACAATGAATCAATATGGTGCTGTACTTGATGACTTCGGCTTCCAAACTATGCTTGCCAAGCTTATGGAAGACTTTATTTGTCCTTTGTCTGAAGTGTTCTATGCTGAAATTGGTGGAGCAAACCTTGATTCTCATCATGGATTTATTGTCGAATATGGTAACAACAGAGATGTTGACTTGGGTTTACATGTGGATGACGCGGAAGTAACCTTGAACGTTTGCTTGGGTACACAGTTTTCTGGAGGAGACTTGTTTTTTCGTGGCATGCGATGTGAGAAGCATGTAAATACAGAAAGCCGTCCAGAGGAGGTATTTGATTATTCTCATTTCCCTGGACAAGCTGTGCTTCATCATGGTCGTCATCGTCATGGTGCCAGAGCTACAATTTCGGGTCATCGGGTCAACCTACTTCTGTGGTGCAGAAGAGAGATTAGAAAGTATCAAAAAGGTTTCTGTAGCTGGTGTGGTGAGTGCAAGCGTGAGAAGGAAGAAAGGATGCACTTACTAATTAATAATACCAAACTGATTTTATTTAGGTGTATGTATGCAACCTGA 1236 0.4345 MSFLRSSSDRRKSASKATRSAVHGGGKSKIVVNQRLQLNPDKNHQPESYEDLKSNHFGPWIFQELEKHLPSNMLDVSREKKVKYMRGILNEYLSPAESFRVRFTVRSVGLTVRFGFDNRSQGLGTLGCSETRKSQKQKEFRQKIISNYPPLYKELYTMDPTAFFVPDFLRAINDNTEESFRRIMSEPAPGIFAFEMLQPRFCELLMSEFDNFERWVHDQKVRVMRPNTMNQYGAVLDDFGFQTMLAKLMEDFICPLSEVFYAEIGGANLDSHHGFIVEYGNNRDVDLGLHVDDAEVTLNVCLGTQFSGGDLFFRGMRCEKHVNTESRPEEVFDYSHFPGQAVLHHGRHRHGARATISGHRVNLLLWCRREIRKYQKGFCSWCGECKREKEERMHLLINNTKLILFRCMYAT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0681 411 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 102 - -
Lal23g0681 411 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 129 405 - -
Lal23g0681 411 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 270 369 IPR005123 -
Lal23g0681 411 SMART p4hc 189 368 IPR006620 GO:0005506|GO:0016705|GO:0031418
Lal23g0681 411 MobiDBLite consensus disorder prediction 1 30 - -
Lal23g0681 411 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 14 102 - -
Lal23g0681 411 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 129 405 - -
Lal23g0681 411 SUPERFAMILY Clavaminate synthase-like 208 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0681 Lal-Chr23 9477677 9489549 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0681 - - pvy:116105969 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0681 23 9477677 9489549 Lal8g0453 8 3016238 3020800 ECH
Lal23g0681 23 9477677 9489549 Lal23g0681 23 9477677 9489549 ECH
Lal23g0681 23 9477677 9489549 Lal8g0453 8 3016238 3020800 PCT
Lal23g0681 23 9477677 9489549 Lal10g0964 10 16939217 16945284 PCT
Lal8g0453 8 3016238 3020800 Lal23g0681 23 9477677 9489549 PCT
Lal10g0964 10 16939217 16945284 Lal23g0681 23 9477677 9489549 PCT