Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0964 ATGTCGCTCCAAAGTAGCTCCAGTGACAACCCGGAAAGTCAATCGCCTGCAACCGGAGGCAATGGTGCTAGAAACAAAGGAAACGGCACCGTTTTATCGAACATGAGGTTGAGACTGAACCCTAGCAAGGAGCATGAACCAGACGATTACGAAGATATGGAATTGGAATACAGCGCTGCTCTCTTGAGCTCCCTTGAGATGTATCTTCCTCCTAACATGCTCAATGATCCTCGCCATGAAAAGGCAAAGTTCATGCAAGACATTTTGATCAAGTATCTTCCTCCTGGAGAACGTAAAAGAGCTATAAAGCATAGAGAATACAGACAGAAGATAATATCAAATTATCAGCCTCAAAATCGGGAGTTGTACACTATTAGTCCTACTAAATTCTTCGTTCCAGCATTTCTTAAAGCAATTAATGATAATACAGAACAAAGCTTTAGAAGTATAGTATCCGAGCCCTCTCCAGGCATTTTCGTGTTTGAAATGCTTCAGAAAGGTTTCTGTGATGCTCTGCTAGAGGAGATTGAGAATTTTGAGAAGTGGGTGACTGAGGCAAAATTTCGAATCATGCGCCCCAACACAATGAATAGATATGGTGCTGTACTTGATGACTTTGGCTTTGAAACAATGCTTGACAAACTTATGGAAGGTTTTATTCGCCCTTTATCTAGAGTGTTCTTTGCCGAAGTTGGAGGATCAACCTTGGATTCACATCATGGATTTGTTGTTGAATATGGTCAAGATAGAGATGTTGACTTGGGTTTCCATGTGGATGATTCGGAAGTAACCTTGAATGTTTGCTTGGGTAAGCAATTTTCTGGAGGGGAGTTGTTTTTTCGGGGAACACGATGTGAGAAACATGTAAATACAGGAACTCAATCAGAGGAGATCTTTGATTATTCCCATGTCCCTGGACAAGCTGTTCTTCACCGTGGTCGTCATCGCCATGGTTCTAGAGCTACAACATCTGGTCATCGGATCAACCTACTTCTGTGGTGCAGAAGTTCTGTCTTCAGAGAGATGAAAAGGTATCAAAAAGATTTCCCTAGCTGGTGTGGTGAGTGTAACCGTGAGAAAAAGGAAAGGCAGCGCTCCTCAATTGCTACCAGATTGGATATTTTCAGGAGGGAAAGTGAATCTACTGCATAA 1152 0.4227 MSLQSSSSDNPESQSPATGGNGARNKGNGTVLSNMRLRLNPSKEHEPDDYEDMELEYSAALLSSLEMYLPPNMLNDPRHEKAKFMQDILIKYLPPGERKRAIKHREYRQKIISNYQPQNRELYTISPTKFFVPAFLKAINDNTEQSFRSIVSEPSPGIFVFEMLQKGFCDALLEEIENFEKWVTEAKFRIMRPNTMNRYGAVLDDFGFETMLDKLMEGFIRPLSRVFFAEVGGSTLDSHHGFVVEYGQDRDVDLGFHVDDSEVTLNVCLGKQFSGGELFFRGTRCEKHVNTGTQSEEIFDYSHVPGQAVLHRGRHRHGSRATTSGHRINLLLWCRSSVFREMKRYQKDFPSWCGECNREKKERQRSSIATRLDIFRRESESTA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0964 383 SUPERFAMILY Clavaminate synthase-like 163 346 - -
Lal10g0964 383 Gene3D q2cbj1_9rhob like domain 156 336 - -
Lal10g0964 383 MobiDBLite consensus disorder prediction 1 37 - -
Lal10g0964 383 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 237 336 IPR005123 -
Lal10g0964 383 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 22 382 - -
Lal10g0964 383 SMART p4hc 156 335 IPR006620 GO:0005506|GO:0016705|GO:0031418
Lal10g0964 383 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 22 382 - -
Lal10g0964 383 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0964 Lal-Chr10 16939217 16945284 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0964 - - gmx:100816390 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0964 10 16939217 16945284 Lal10g0964 10 16939217 16945284 ECH
Lal8g0453 8 3016238 3020800 Lal10g0964 10 16939217 16945284 LSH
Lal23g0681 23 9477677 9489549 Lal10g0964 10 16939217 16945284 PCT
Lal10g0964 10 16939217 16945284 Lal23g0681 23 9477677 9489549 PCT