Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0680 ATGGGGAGCTCTGGACTGTTCAAAAGCAATAATGGGCAGCAACAAAGATTAGGCATAACTGAACCCATTTCATTGGGTGGACCAACTGATTATGATGTGATCAAGACCCGTGAACTCGAAAAGTACTTGCAAGATGCTGGCTTGTATGAGAATCAAGAGGAGGCAGTGGGTAGGGAGGAAGTTCTTGGAAGGCTAGATCAGTTTACTCTGCGTGTTTGTCAAGAAAACTGTGGGGAAGAAAAGAGTAGAATTGTGAAGATTTGGGTCAAAACCATTAGCCGGGCCAAAGGACTGAATGAACAACTGGTGCAAGAAGCAAATGCCAAGATTTTCACTTTTGGATCATATCGGCTAGGGGTGCATGGCCCTGGAGCAGATATAGACACTCTGTGTGTGGGACCTAGACATGCTTCCAGAGACGAAGACTTCTTTGGTGAGCTGCATAGGATGCTATCCGAGATGCCTGAAGTAACAGAGTTGCACCCTGTGCCTGATGCTCATGTTCCAGTGATGAAGTTCAAGTTCAATGGTGTTTCTATAGATCTCCTTTATGCAAAGTTAGCTTTGTGGGGTGTTCCCGAAGACTTGGATATATCACAGGAGTCGATATTACAAAATGTAGATGAACAAACTGTTCGTAGTCTTAATGGTTGTAGAGTGACCGATCAAATCCTACGTTTCGTTCCAAATATTCAGAATTTTCGCACGACATTGAGATGCATGAGGCTTTGGGCAAAGCGACGTGGCGTTTATTCAAATGTTGCTGGTTTTCTTGGTGGTATAAATTGGGCATTGCTTGTTGCTCGAATATGCCAGCTATTTCCTAATGCACTGCCTAATATGGTATATACTCAGTGGCGCTGGCCAAATCCTGTACTGCTTTGTGCTATTGAAGAAGGATCTCTTGGACTTCAAATTTGGGATCCAAGAAGAAATCCCAAGGATAGATTCCACCTAATGCCAATAATTACTCCGGCATATCCGTGCATGAATTCTAGCTACAATGTCTCATCGAGTACATTGCGTATTATGACAGAGGAATTTCAGAGGGGAAATGAAATATGCGAGGCTATGGAGGTTAGCAAGGCTGATTGGGACACTCTCTTTGAGCCTTATCCCTTTTTTGAATATTATAAGAATTATCTGCAGATAGACATTTCAGCAGAGAATGCTGACGATCTTAGAAAATGGAAGGGATGGGTTGAGTCTCGCCTCCGCCAGTTGACATTGAAGATTGAGAGGCACACTTATGGTATGCTTCAGTGCCATCCACATCCTGGTGACTTTTCTGACAAATCAAAACCGTTCCACTGCTCTTACTTCATGGGACTGCAACGTAAGCAAGGAGCTCCTGTGAATGAAGGTGAACAATTTGATATAAGACTAACTGTTGAAGAATTTAAGCAGTCCGTTAACATGTATACGCTATGGAAACCTGGAATGTTGATCCATGTGTCCCATGTTAAACGCCGAAATATACCTAACTTTGTATTTGCTGGTGGAATTCGACCTTCCCGCCCAACTAAGGTAACTTGGGACAGTAAACGAAGCTCAGAATTAAAGATTTCTGGCAATGCTCAAGCACAAAAATCTGAAGAAGTTAAAGCGGTTGTATTTGAAGTAGATGATGAAAGGAAGAGAAAACGAGCAGAGGATAGCATGGATAACTTGAGAAATTGCAAGTCCTTTGCATCTTTCCCTCCCTCCATGGGGGAAGTTCATGAAGTTAGAAATCCTATTAGCACTGCTAGTTCTTGCTCTATGAAATGTGATGACTCAGAAGTCAACAGTATAAGTGAACAAAAGAATGAGAAACCTGGTTTTAAATCTTTAGGAGGGAGTCCTTCTGAGGACACTGAGACCAATGGATCAGTGGGAAGCAAGCTACAAGTCAACCCTATTTTTGCTACTACAGATACATTTAGTTGTAAAGAAGCTGAAAAGGTAGCCACTGAGAAGATTATGTCGGGTCCGTTTGAGGCGCATCAAGCCTTTTTAGGAGAATCTGAGGAGCTTGAAGATGATCTTGAGTACATAAATAAAAAGGGTTTTGGTGGGAATATGAAAAAGATCAACTTGGAGTCTTCAAACTCTACGGCTAGTGCGTCTGAAGAAAAAGTTATTTCTAATAAGGAAACCACTTGTTCAACTCGTTTAACCTTGAATGGCGGCTTGGACGAGCTTGAGCCTGCTGAACTTGCACCACCATGGTTAACTGCTGCACCTGTGCCACAGCGGAAGCCCCTTATCAGGTTGAACTTCACCTCCTTAGGCAAAGCTGCTGACAAAAGCTTTTAG 2298 0.4273 MGSSGLFKSNNGQQQRLGITEPISLGGPTDYDVIKTRELEKYLQDAGLYENQEEAVGREEVLGRLDQFTLRVCQENCGEEKSRIVKIWVKTISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHASRDEDFFGELHRMLSEMPEVTELHPVPDAHVPVMKFKFNGVSIDLLYAKLALWGVPEDLDISQESILQNVDEQTVRSLNGCRVTDQILRFVPNIQNFRTTLRCMRLWAKRRGVYSNVAGFLGGINWALLVARICQLFPNALPNMVYTQWRWPNPVLLCAIEEGSLGLQIWDPRRNPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGNEICEAMEVSKADWDTLFEPYPFFEYYKNYLQIDISAENADDLRKWKGWVESRLRQLTLKIERHTYGMLQCHPHPGDFSDKSKPFHCSYFMGLQRKQGAPVNEGEQFDIRLTVEEFKQSVNMYTLWKPGMLIHVSHVKRRNIPNFVFAGGIRPSRPTKVTWDSKRSSELKISGNAQAQKSEEVKAVVFEVDDERKRKRAEDSMDNLRNCKSFASFPPSMGEVHEVRNPISTASSCSMKCDDSEVNSISEQKNEKPGFKSLGGSPSEDTETNGSVGSKLQVNPIFATTDTFSCKEAEKVATEKIMSGPFEAHQAFLGESEELEDDLEYINKKGFGGNMKKINLESSNSTASASEEKVISNKETTCSTRLTLNGGLDELEPAELAPPWLTAAPVPQRKPLIRLNFTSLGKAADKSF 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0680 765 MobiDBLite consensus disorder prediction 592 626 - -
Lal23g0680 765 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 373 498 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lal23g0680 765 Gene3D Beta Polymerase, domain 2 50 222 IPR043519 -
Lal23g0680 765 Pfam Poly(A) polymerase predicted RNA binding domain 374 432 IPR007010 GO:0003723|GO:0043631
Lal23g0680 765 Pfam Poly(A) polymerase predicted RNA binding domain 431 501 IPR007010 GO:0003723|GO:0043631
Lal23g0680 765 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 693 - -
Lal23g0680 765 Pfam Nucleotidyltransferase domain 99 186 IPR002934 GO:0016779
Lal23g0680 765 Gene3D - 18 369 - -
Lal23g0680 765 PANTHER POLY A POLYMERASE 1 693 - -
Lal23g0680 765 Pfam Poly(A) polymerase central domain 18 371 IPR007012 GO:0004652|GO:0043631
Lal23g0680 765 SUPERFAMILY PAP/OAS1 substrate-binding domain 229 371 - -
Lal23g0680 765 CDD NT_PAP_TUTase 100 228 - -
Lal23g0680 765 SUPERFAMILY Nucleotidyltransferase 18 227 IPR043519 -
Lal23g0680 765 Gene3D Poly(A) polymerase predicted RNA binding domain 373 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0680 Lal-Chr23 9468482 9474934 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0680 K14376 - gmx:100816915 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0680 23 9468482 9474934 Lal8g0451 8 3002693 3008297 ECH
Lal23g0680 23 9468482 9474934 Lal23g0680 23 9468482 9474934 ECH
Lal15g0932 15 7165904 7173201 Lal23g0680 23 9468482 9474934 LSH