Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0932 ATGGGGAGCTCTGGATTGAGCAAAAGCAATAATGGGCAGCAACAAAGATTAGGCATAACTGAACCCATTTCATTGGGTGGACCAACTGATTATGATGTCATCAAAACCCGTGAACTCGAGAAGTACTTGCAAGACGCCGGCTTGTACGAGAATCAAGAGGAGGCAGTGAGTAGGGAGGAAGTGCTTGGAAGGCTAGACCAGATCGTGAAGACTTGGGTCAAAACCATTAGTCGGGCCAAAGGACTCAATGAACAAATGGTTCAAGAAGCAAATGCCAAGATTTTCACTTTTGGCTCCTATCGATTAGGGGTGCATGGCCCTGGAGCAGATATAGACACACTGTGTGTGGGACCTAGACATGCTTCCAGAGACGAAGATTTCTTCGGCGAGTTACATAAGATGCTATCCGAGATGCCGGAAGTATCAGAGTTGCACCCAGTGCCTGATGCTCATGTTCCAGTGATGAAGTTCAAGTTCAATGGTGTTTCTATAGATCTCCTTTATGCAAAGTTAGCTTTGTGGGGTATTCCTGAAGACTTAGATATATCACAGGAGTCAATATTACAAAATGTAGATGAACAAACTGTCCGTAGTCTTAATGGTTGTAGAGTGACTGATCAAATCCTGCGTTTGGTTCCAAATATTCAGCATTTTCGCACGACATTGAGATGCATGAGGCTTTGGGCGAAGTGCCGTGGTGTTTATTCAAATGTTGCAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGTTGCTCGAATATGCCAGCTTTTCCCTAATGCACTGCCTAATATGTTAGTGTCTCGATTCTTTAGGGTATATACTCAGTGGCGCTGGCCAAATCCTGTACTGCTTTGTGCTATTGAAGAAGGATCTCTTGGACTTCAAATTTGGGATCCAAGAAGAAATCCCAAAGACAGATTCCACCTAATGCCAATAATTACTCCTGCGTATCCGTGCATGAATTCTAGCTACAATGTGTCTTCGAGTACATTGCGTATCATGACAGAGGAGTTTCAGAGGGGAAATGAAATATGTGAGGCTATGGAGGCTAGCAAGGCTGATTGGGATACTCTTTTCGAGCCTTATCCCTTTTTTGAAGCTTATAAGAATTACCTGCAGATAGACATTTCAGCAGAGAATGCTGACGATCTTAGAAAATGGAAAGGATGGGTTGAGTCTCGTAACCGCCAATTGACATTGAAGATCGAGAGGCACACTTATGGCATGCTTCAGTGCCATCCGCATCCTGGTGACTTTTCTGACAAATCTAAACCTTTCCACTGCTCTTACTTCATGGGACTGCAACGTAAGCAAGGAGTTCCCGTGAATGAAGGTGAACAATTTGATATAAGACTAACTGTTGAAGAATTTAAGCAGTCTGTTAACATGTATACACTATGGAAACCCGGAATGTTTATCCATGTGTCCCATGTGAAACGCCGCAATATACCTAACTTTGTATTTCCCGGTGGTGTTCGACCTTCCCGCCCAACTAAGATAACTTGGGACAGTAAACGAAGCTCAGAACTAAAGATTTCTGGCAATGCTCAAGCAGAAAAATCTGAAGAAGTTAAAGCGGTTTTATTTGAAGCAGATGATGAAAGGAAGAGAAAACGAGCAGAGGATAGCGTGGATAACTTGAGAAATTCCAAGTCTTTTGCATCTTTGCCTCTCTCCACCGGGGAAGTTCATGAAGTAAGAAATCCTATTAGCACTACCAGTTCTTGCTCTATGAAATGTGATGATTCAGAAGTCAACATTATGAGTGAACCAAAGAGTGAGAAACCTGATTTGAAATCTTTAGGGGGTTGTCCTTCTAGCGACATCGAGACCAATGGATCAGTGGAAAGCAAGTTGCAATTCAACCCTATGCTTGCTACTACAGATACATCTACTTCTAAAGATGCCGAAAAGCTAGCCATTGAGAAGATTATGTCGGCTCCATATGAGGTACATCAAGCCTTTCCAGAAGAACCCGAGGAGCTTGAAGATGACTTCGAGTATAGAAATCAAGTCAAATATTTTGGTGGGAATATGAAAAAGAGCAACATAGAGTCTTCAAACTCAACAGCTGCAGTGTCTGAAGAAACAGTTATTTCTAATAAGGAAACCATTTGTTCAACTCAATTAAGCTCTAACGGGGGCTTGGAGGAGCTTGAGCCTGCTGAATTTGCACCACCATTGTTAAGTGTCCCTGCACCTTTGTCACAGAAGAAGTCCCTTATCAGGTTGAATTTCACTTCCTTAGGCAAAGCTGCTGATAAAAGTTCTTAA 2277 0.426 MGSSGLSKSNNGQQQRLGITEPISLGGPTDYDVIKTRELEKYLQDAGLYENQEEAVSREEVLGRLDQIVKTWVKTISRAKGLNEQMVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHASRDEDFFGELHKMLSEMPEVSELHPVPDAHVPVMKFKFNGVSIDLLYAKLALWGIPEDLDISQESILQNVDEQTVRSLNGCRVTDQILRLVPNIQHFRTTLRCMRLWAKCRGVYSNVAGFLGGINWALLVARICQLFPNALPNMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQIWDPRRNPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGNEICEAMEASKADWDTLFEPYPFFEAYKNYLQIDISAENADDLRKWKGWVESRNRQLTLKIERHTYGMLQCHPHPGDFSDKSKPFHCSYFMGLQRKQGVPVNEGEQFDIRLTVEEFKQSVNMYTLWKPGMFIHVSHVKRRNIPNFVFPGGVRPSRPTKITWDSKRSSELKISGNAQAEKSEEVKAVLFEADDERKRKRAEDSVDNLRNSKSFASLPLSTGEVHEVRNPISTTSSCSMKCDDSEVNIMSEPKSEKPDLKSLGGCPSSDIETNGSVESKLQFNPMLATTDTSTSKDAEKLAIEKIMSAPYEVHQAFPEEPEELEDDFEYRNQVKYFGGNMKKSNIESSNSTAAVSEETVISNKETICSTQLSSNGGLEELEPAEFAPPLLSVPAPLSQKKSLIRLNFTSLGKAADKSS 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0932 758 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 362 - -
Lal15g0932 758 MobiDBLite consensus disorder prediction 1 20 - -
Lal15g0932 758 Pfam Poly(A) polymerase central domain 18 362 IPR007012 GO:0004652|GO:0043631
Lal15g0932 758 PANTHER POLY A POLYMERASE 1 693 - -
Lal15g0932 758 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
Lal15g0932 758 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 693 - -
Lal15g0932 758 SUPERFAMILY Nucleotidyltransferase 18 211 IPR043519 -
Lal15g0932 758 MobiDBLite consensus disorder prediction 1 24 - -
Lal15g0932 758 Gene3D - 18 360 - -
Lal15g0932 758 Gene3D Poly(A) polymerase predicted RNA binding domain 364 479 - -
Lal15g0932 758 CDD NT_PAP_TUTase 58 212 - -
Lal15g0932 758 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 364 490 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lal15g0932 758 Pfam Nucleotidyltransferase domain 83 170 IPR002934 GO:0016779
Lal15g0932 758 Coils Coil 531 551 - -
Lal15g0932 758 Pfam Poly(A) polymerase predicted RNA binding domain 422 496 IPR007010 GO:0003723|GO:0043631
Lal15g0932 758 Pfam Poly(A) polymerase predicted RNA binding domain 365 423 IPR007010 GO:0003723|GO:0043631
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0932 Lal-Chr15 7165904 7173201 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0932 K14376 - gmx:100816915 1179.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0932 15 7165904 7173201 Lal15g0932 15 7165904 7173201 ECH
Lal15g0932 15 7165904 7173201 Lal23g0680 23 9468482 9474934 LSH