Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0844 ATGTATTGCCAGAATATCAGCAATAAAAGTAGGGTTGATGTTGCCAGAGTCATGAATAGCTATTTCTGCGTTGGCATATTCTTATTAGGTTTGGAAGCTTATGTGCTCGCTTTCAATTTGCCTTTGGGTGGCCAAATCATTATCTATTCTGCTCTTTGGCAAGTTCAGGCCTTTTTTGCTTACCGAATTGAATATTGTGGTATAAAGGTCATATTGATTTCACCAAGAAACTTCCAAGATCCTCATATTTTGACTTTCAATTTGATCCAGATGTCAGAAATTGACACGGCAGTTATCAAACCTGAGCCACTTTGCGACTGGCATGTCCGTTACACCAACTATGGGAAAAAACCCAACTCTAACCATGCGTTTCAGCCCCATATTCATTTCTTCCGTCACTCTTATGACCAGCCAAGTTCATGCCTACTTGAAGGGCATTTAGGCAGCCGCCTAAGTCCCCCATTTGTTCAGCACGGCGGCTATAGTTGTTATCACGTCACTAGGAGGTCACAAGTTCGAGTCATGGAAAAAGCTTCTCTAAATGCAAAGATGATGAAGCCCTATATCTGGCTCCAAACTTCTGATGGTTCAATCCAACAAGTGGAGCAAGAAATTGCAATGTTTTGCCCGCTAATATGTCAAGAAGTAATACAAAAAAGCATGGGTTCTTCTAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAATCCTGCTATGTTGAGTTTAGTTCTTGACTATTGTCGATTTCATCAAGTACCAGGCCGCTCAAATAAGGAACGAAAGTCTTATGATGAGAAATTCGTTAGGATGGATACGAACAAGCTCTGTGAAGTGACGTCTGCAGCAGACAGCCTAAAGTTGAAGCCGCTGGTGGATCTTACCAGTCGTGCACTTGCTCGAATAATTGAAGGAAAATCACCAGAGGAGATACGTGACATATTTCACATTCCCGATGATCTTACAGAGGAAGAGAAGCTGGAGCCCTTGAAAAACTTAACTGATGACCCAAGGATCAGGCTTTTGAATCGTTTGTATGCCAAAAAGAGGAAAGAACTAAAAGAACGTGAAAAGTTGAAGAATGTTGAAGCTGGAGAAGAGCATGTAGATGAGCGTTCTGTTGATGACCTTTTGTCTTTTATTAATGGAAAGGACTCGGATCAAAAGGGGAATAAAACTTCCAAAAATAAAAAGAAGAACCGGAGGAAAAAAGAGCAACAAAAGAACTCTTCTCTGAAAGAAGCATCTGAACTGAATAAGGAGGAGGTAAATGGTAATAATATCAGACACCAAAGTTCTGAAGCAATTAGAATCGGCGAGACCTCAAATTTAGACTATACAGAAGATCGGACTTTTAATGATTATGTTGACTTTGATGATGGAGATATAGATGATGAGATCGATCCTGCATTGAAGGAAAAAATTGACAGGGAAGTGGAAGATTTTGCCCGCCGATTAAATTCGAACTGGCCAGAGAGGATGCAAGACTTTTTATCATCAGGGCGAGAAAGGAATACAACACTTTTTACTACCGACAGGGCTGGTTTTCTAAGTCGACATGCATGA 1563 0.4056 MYCQNISNKSRVDVARVMNSYFCVGIFLLGLEAYVLAFNLPLGGQIIIYSALWQVQAFFAYRIEYCGIKVILISPRNFQDPHILTFNLIQMSEIDTAVIKPEPLCDWHVRYTNYGKKPNSNHAFQPHIHFFRHSYDQPSSCLLEGHLGSRLSPPFVQHGGYSCYHVTRRSQVRVMEKASLNAKMMKPYIWLQTSDGSIQQVEQEIAMFCPLICQEVIQKSMGSSKNCAICLPQQVNPAMLSLVLDYCRFHQVPGRSNKERKSYDEKFVRMDTNKLCEVTSAADSLKLKPLVDLTSRALARIIEGKSPEEIRDIFHIPDDLTEEEKLEPLKNLTDDPRIRLLNRLYAKKRKELKEREKLKNVEAGEEHVDERSVDDLLSFINGKDSDQKGNKTSKNKKKNRRKKEQQKNSSLKEASELNKEEVNGNNIRHQSSEAIRIGETSNLDYTEDRTFNDYVDFDDGDIDDEIDPALKEKIDREVEDFARRLNSNWPERMQDFLSSGRERNTTLFTTDRAGFLSRHA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0844 520 SMART skp1_3 186 287 IPR001232 GO:0006511
Lal22g0844 520 SUPERFAMILY POZ domain 187 251 IPR011333 -
Lal22g0844 520 Coils Coil 341 361 - -
Lal22g0844 520 Coils Coil 394 420 - -
Lal22g0844 520 MobiDBLite consensus disorder prediction 406 423 - -
Lal22g0844 520 Pfam Skp1 family, dimerisation domain 288 325 IPR016072 GO:0006511
Lal22g0844 520 SUPERFAMILY Skp1 dimerisation domain-like 261 331 IPR036296 GO:0006511
Lal22g0844 520 Gene3D Potassium Channel Kv1.1; Chain A 182 331 IPR011333 -
Lal22g0844 520 PANTHER SKP1-LIKE PROTEIN 20 180 449 - -
Lal22g0844 520 PANTHER SKP1 180 449 IPR016897 GO:0006511
Lal22g0844 520 MobiDBLite consensus disorder prediction 379 432 - -
Lal22g0844 520 Pfam Skp1 family, tetramerisation domain 188 251 IPR016073 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0844 Lal-Chr22 6359705 6367900 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0844 - - gmx:100794666 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0844 22 6359705 6367900 Lal22g0844 22 6359705 6367900 ECH
Lal6g0966 6 6826753 6833163 Lal22g0844 22 6359705 6367900 LSH
Lal22g0844 22 6359705 6367900 Lal18g0722 18 8145590 8151129 LSH
Lal6g0966 6 6826753 6833163 Lal22g0844 22 6359705 6367900 PCT
Lal22g0844 22 6359705 6367900 Lal6g0966 6 6826753 6833163 PCT