Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0819 ATGAATGATGATTTTGTTAGGTATGCAGTAGTGAGTGGAGGTAATAAGGGGATTGGTTATGGAATATGCAAGAAATTGGCTTCAATTGGTATTGTGGTTGTACTTACAGCTAGAAATGAAAAAAGGGGTTTAGAAGCAATTAAAACATTGAAAGAGTTTGGTCTCTCTCTGATTTTTCATCAACTTGATGTAACTGATCCTGCAAGTGTTGCTTCTCTAGTAGATTTCATTAAAACCCAATTTGGAAAACTTGATATCTTGGTGAACAACGCGGGTACTCCTGGGGGAATAGTAGATGGAGAGAATGTTCTTAGAAGGAAAAGGGGTGAATTATCGGATTGGAATAAAATAGTTTATCAAAATTATGAGTTAGCTGAAGAAAGTGTTGAAACAAACTTCTTTGGTACAGAAAGAGTAACTGAAGCTCTTATTCCTATGCTTCAACTATCCAATTCACCCAGAATTGTCAATCTTTCCTCCAGAATGGGAGTATTGCAGAATATACCAAATGAATGGGCAAGAGGAGTGTTTGGTGATGACATAGAAAAAAACATCCTTACAAATGAAAAACTTGGTGAGGTTCTTAGAGAGTTTCTTAAAGATTACAAAGAAGGATCATTGAAAACCAAAAACTGGCCACTTGTTGTTTCTGGTTACACAATGTCAAAAGCAGCATTGAATGCTTACACAAGATTACTAGCTAAGAAGTTCCCACATTTTTGCATAAATTGTTTATGTCCTGGCTTTGTCAAAACTGATATAAACCAAAATACTGGGTTTTTAAGCATTGATGAAGGTGCTGAATGTCCTGTTAAGTTAGCTTTGTTGCCAGATAATGGTCCTTCAGGTCTCTTTTATTTCATGGATGAAGTCATTTCCTTTTGA 885 0.3571 MNDDFVRYAVVSGGNKGIGYGICKKLASIGIVVVLTARNEKRGLEAIKTLKEFGLSLIFHQLDVTDPASVASLVDFIKTQFGKLDILVNNAGTPGGIVDGENVLRRKRGELSDWNKIVYQNYELAEESVETNFFGTERVTEALIPMLQLSNSPRIVNLSSRMGVLQNIPNEWARGVFGDDIEKNILTNEKLGEVLREFLKDYKEGSLKTKNWPLVVSGYTMSKAALNAYTRLLAKKFPHFCINCLCPGFVKTDINQNTGFLSIDEGAECPVKLALLPDNGPSGLFYFMDEVISF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0819 294 Gene3D - 6 294 - -
Lal22g0819 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 206 234 IPR020904 GO:0016491
Lal22g0819 294 Pfam short chain dehydrogenase 8 165 IPR002347 -
Lal22g0819 294 PANTHER OXIDOREDUCTASE-RELATED 1 294 - -
Lal22g0819 294 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Lal22g0819 294 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Lal22g0819 294 PRINTS Glucose/ribitol dehydrogenase family signature 219 238 IPR002347 -
Lal22g0819 294 PRINTS Glucose/ribitol dehydrogenase family signature 238 255 IPR002347 -
Lal22g0819 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 294 - -
Lal22g0819 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 279 IPR036291 -
Lal22g0819 294 CDD carb_red_PTCR-like_SDR_c 7 294 IPR045313 GO:0016616
Lal22g0819 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Lal22g0819 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 161 IPR002347 -
Lal22g0819 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 219 238 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0819 Lal-Chr22 6124276 6127099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0819 10 259 Acyl Lipid Metabolism Gene Families AT1G24360 22.134 1.74e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0819 K15095 - gmx:100802560 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0819 22 6124276 6127099 Lal22g0819 22 6124276 6127099 ECH
Lal6g0935 6 6509379 6511899 Lal22g0819 22 6124276 6127099 PCT
Lal22g0819 22 6124276 6127099 Lal6g0937 6 6526866 6529129 PCT