Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1236 ATGAAGAAAAGTATCGTTCTCACAAAGCCATTCTCAGTAGAGAATGAATCAGATTCTGAAGGGTCTTATAGAGCTCCAAATCTTTTGAGGCGTCTATTAAGTTTACTTAAGAATGTGCGGCGAGGATCTGATCTTACTCGCTTTCAGCTACCACCTCAATTCAACTTTCCAAAGTCACAACTTCAATGCTATGGTGAATCTTTATATTCCATATCTTCAAACTTGTTAAGTAGGTGCAACAATGGACATAGCCCACTTGATAGACTAATAAATGTTGTAGCATGGAGTATATCTACCACAAGACCACCTATTTTTGGAGTTGCTCCTTATAATCCCACTCTTGGAGAGACCCACCATGTCTCCAAAGGAAACCTTAATGTCTTACTAGAACAGGTTTCACACCACCCTCCAGTATCTGCCCTCCATGCCACAGATGAAAAAGAGAACATAGAAATTATATGCTGCCATTATCCTATTCCAAAGTTCAATGGTACTAATGTGGAAGCTAAGGTTCATGGCAAACGGCAACTGAAGCTACTCAATCATGGAGAGACATATGAAATGAATTCTCCTAGTCTCTTTATCAGAATTCTTCCGATTCCCGGGGTCGATTGGGTTGGCGATGTCAATATCAGGTGCCTAGAATCTGGCCTTATGGCCGAGATATGCTTCAAAACTCAATCTTTCCTTGGTTTAAGTGGAAATCAAAGATTGATAAAGGGGAAAATCTTCGATTCATCGTCATTGAAGATTTTATTTGAAGTAAATGGTCATTGGGATAGTATTGTAACACTGAAGGATATGAACAATGCAGAATCAAGAGTGATATATGATGCAAAACAAACAATTTCAGGGCTCCAAGCTCCTATTGTCAAGGATGAAGAGAATGTGTGGCCAACTGAATCAACTCTTATTTGGAGTGAATTGAGCCAAGCCATTATGAGCCAAGACTGGGAAAAAGCAATAGAAGCAAAGAAATTTGTAGAGGAAAGACAAAGAGATATGTTGAGAGAAAGAGAGTCAAAAAGGGAAACATGGGTTCCTAAACATTTTACACTTTGTCAAAACAAAGAAGGGTTCTGGGACTGTTTACCAATTCAAAAATTGGTCCCAAACTCTCCTATCATAACCTTGTAA 1137 0.3887 MKKSIVLTKPFSVENESDSEGSYRAPNLLRRLLSLLKNVRRGSDLTRFQLPPQFNFPKSQLQCYGESLYSISSNLLSRCNNGHSPLDRLINVVAWSISTTRPPIFGVAPYNPTLGETHHVSKGNLNVLLEQVSHHPPVSALHATDEKENIEIICCHYPIPKFNGTNVEAKVHGKRQLKLLNHGETYEMNSPSLFIRILPIPGVDWVGDVNIRCLESGLMAEICFKTQSFLGLSGNQRLIKGKIFDSSSLKILFEVNGHWDSIVTLKDMNNAESRVIYDAKQTISGLQAPIVKDEENVWPTESTLIWSELSQAIMSQDWEKAIEAKKFVEERQRDMLRERESKRETWVPKHFTLCQNKEGFWDCLPIQKLVPNSPIITL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1236 378 ProSitePatterns Oxysterol-binding protein family signature. 130 140 IPR018494 -
Lal21g1236 378 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 1 376 IPR000648 GO:0008289
Lal21g1236 378 SUPERFAMILY Oxysterol-binding protein-like 32 363 IPR037239 -
Lal21g1236 378 Pfam Oxysterol-binding protein 34 308 IPR000648 GO:0008289
Lal21g1236 378 Gene3D - 298 368 - -
Lal21g1236 378 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 4C 1 376 - -
Lal21g1236 378 Gene3D - 111 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1236 Lal-Chr21 15418060 15424742 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1236 K22285 - gmx:100783943 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1236 21 15418060 15424742 Lal21g1236 21 15418060 15424742 ECH
Lal17g1564 17 17083713 17089950 Lal21g1236 21 15418060 15424742 LSH
Lal7g1104 7 17015262 17024909 Lal21g1236 21 15418060 15424742 PCT
Lal19g1247 19 15686763 15690651 Lal21g1236 21 15418060 15424742 PCT
Lal21g1236 21 15418060 15424742 Lal7g1104 7 17015262 17024909 PCT
Lal21g1236 21 15418060 15424742 Lal19g1247 19 15686763 15690651 PCT