Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1564 ATGGTAAAGAAGGAAGAGAAGAAAATTGTTCTAACTAAGCCATTGTCATTAGAAGGTGAATCTAATTCAGATACCACTTATACAGCCCCTAATCTTTTGCAACGAATACTAAGTTTATTTAAGAATGTACGGCCAGGATCTGATCTTACTCGTTTTGAGCTGCCACCACTATTTAACTTACCAAAGTCACAACTTCAATGCTATGGTGAATCAGTGTACTGCACAGGTTTGAACATGCTAAGCATGTGTAATAAGGGTCAGAGTCCAGAAGAGAGGTTCATATATGTGGTTGCATGGTGCATTTCTACCACACGTCCTGCCACTTTTGGTGTTGCTCCATTTAATCCTATACTTGGTGAGACACACCATGTTTCTAAGGGCAACCTTAATGTCTTACTTGAGCAGGTTTCACACCACCCTCCAGTAACTGCACTTCATGCCACAGATGAGAAGGAAAACATAGAAATGATATGGTCCCAACAACCTGTTCCTAAGTTTAATGGTACATCAGTTGAAGCTAAAGTCCATGGCAAAAGGAAGTTGAAGCTTGTTAATCATGGAGAAACATATGAAATGAATTGTCCTCATCTTTTATTCAAAATACTTCCAATTCCTGGAGTTAATTGGGTTGGAAATGTTAACATAAGGTGCCTAGAAACAGGACTAGTAGCTGAGTTATCTTATAGGTCAAGTCATTCATTTTTAGGACTTGGTGGAAATCATAAAGTGATCAAAGGAAAGATTTTTCACTCATCATCTTTGAAAGTCTTATATGAAGTTGATGGTCATTGGGATAGCACTGTGAAACTGAAGGATACAAATAATGGATCAGTCAGAGTGATATATGATGCAAAACAAGTCATTTCAGGCCTCAAAGCTCCTACTGTCAAGGATGCAAAGAGTGTGTGGCCAACAGAATCAGCCTATGTTTGGGGTGAAACAAGCCAAGAAATTATGAACAAAAATTGGGAGAAAGCAAGAGAAGCAAAGCAAGTTGTAGAGGAAGAACAAAGGAAACTCTTAAGAGAAAGAGAGTCAAAACAAGAAAGTTGGAATCCTAAACATTTTACTGTGGCTTATAGCAAAGAAGAAGGGTGGGATTGTTCACCAATTCATAAATGGGTTTCAAATGCTCCTATTATAGCACAATAA 1152 0.3811 MVKKEEKKIVLTKPLSLEGESNSDTTYTAPNLLQRILSLFKNVRPGSDLTRFELPPLFNLPKSQLQCYGESVYCTGLNMLSMCNKGQSPEERFIYVVAWCISTTRPATFGVAPFNPILGETHHVSKGNLNVLLEQVSHHPPVTALHATDEKENIEMIWSQQPVPKFNGTSVEAKVHGKRKLKLVNHGETYEMNCPHLLFKILPIPGVNWVGNVNIRCLETGLVAELSYRSSHSFLGLGGNHKVIKGKIFHSSSLKVLYEVDGHWDSTVKLKDTNNGSVRVIYDAKQVISGLKAPTVKDAKSVWPTESAYVWGETSQEIMNKNWEKAREAKQVVEEEQRKLLRERESKQESWNPKHFTVAYSKEEGWDCSPIHKWVSNAPIIAQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1564 383 Gene3D - 303 377 - -
Lal17g1564 383 Pfam Oxysterol-binding protein 39 314 IPR000648 GO:0008289
Lal17g1564 383 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 3 381 IPR000648 GO:0008289
Lal17g1564 383 SUPERFAMILY Oxysterol-binding protein-like 34 369 IPR037239 -
Lal17g1564 383 Gene3D - 115 295 - -
Lal17g1564 383 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 4C 3 381 - -
Lal17g1564 383 Coils Coil 326 350 - -
Lal17g1564 383 ProSitePatterns Oxysterol-binding protein family signature. 134 144 IPR018494 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1564 Lal-Chr17 17083713 17089950 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1564 K22285 - gmx:100813724 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1564 17 17083713 17089950 Lal17g1564 17 17083713 17089950 ECH
Lal17g1564 17 17083713 17089950 Lal21g1236 21 15418060 15424742 LSH
Lal7g1104 7 17015262 17024909 Lal17g1564 17 17083713 17089950 PCT
Lal19g1247 19 15686763 15690651 Lal17g1564 17 17083713 17089950 PCT
Lal17g1564 17 17083713 17089950 Lal7g1104 7 17015262 17024909 PCT
Lal17g1564 17 17083713 17089950 Lal19g1247 19 15686763 15690651 PCT