Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0401 ATGAAGAACGTCGAACGAATTGGCAATTTTGCTTTAGCAGGTTTAACCTTAGCACCACTTGTTGTTAAAGTAGATCCAAATGTAAATGTTATTTTGACAGCCTGCTTGACTGTGTTTGTGGGCTGTTATCGTTCGGTCAAACCAACCCCACCAACCGAGACAATGTCCAAAGAACATGCCATGCGATTTCCCTTTGTTGGGAGTGCAATGCTGTTTTCACTTTTCTTGCTCTTCAAGTTTCTGTCTAAGGACTTGGTGAACACTGTATTGACAGCCTACTTCTTTGTACTTGGGACTGTTGCACTTTCGTATGTTCTTTTCTCTCTGTCTGAAGTAGTCGGGCTACATTGTTACCATCAATCAAACATTTGCTTCCAAATCATTGGAATGAGAACCCCACAATCTGGCGTTTTCCGTATTTCAGTTGTATCATTGGAGATTGAGTTTACAAAGGCACAGATCGTGGCAGCAATCCCTGGGGCCTTTTTTTGTGCCTGGTATGCTTTGCAGAAGCATTGGCTGGCGAATAACATATTAGGTCTTGCTTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGGGTGGTCTGTTTGTGTATGACATTTTCTGGGTTTTCTGCACTCCTGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCCATAAAGCTTTTGTTCCCCACATTTGTTTCTTCAAGGCCATTTTCAATGCTTGGACTGGGTGATATTGTTATCCCTGAGAGAACACCAAATCATGTTGGTTCAGATGGTAAGGGACTTGGCATTTACTGTTGTGGGTTTAAATGTGCCGCGGGAGGTATTTTTGTTGCATTGGCTTTGCGGTTTGATGTATCTAGAGGAAAACAGGCCCAGTATTTCAAGAGTGCATTTTTAGGATACACTTTCGGGTTGGTCCTTACCATCATTGTGATGAACTGGTTTAAGGCTGCACAGCCTGCTCTTTTGTATATTGTACCTGCTGTTATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGTTATTGGAGTTCGATGAGGGGAAGACTGCAAATTCATCTGAAGAAGTTGATGACAAATCTAGCAAAAAGGTTGAATGA 1137 0.4195 MKNVERIGNFALAGLTLAPLVVKVDPNVNVILTACLTVFVGCYRSVKPTPPTETMSKEHAMRFPFVGSAMLFSLFLLFKFLSKDLVNTVLTAYFFVLGTVALSYVLFSLSEVVGLHCYHQSNICFQIIGMRTPQSGVFRISVVSLEIEFTKAQIVAAIPGAFFCAWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLGGLFVYDIFWVFCTPVMVSVAKSFDAPIKLLFPTFVSSRPFSMLGLGDIVIPERTPNHVGSDGKGLGIYCCGFKCAAGGIFVALALRFDVSRGKQAQYFKSAFLGYTFGLVLTIIVMNWFKAAQPALLYIVPAVIGFLAAHCLWNGDVKQLLEFDEGKTANSSEEVDDKSSKKVE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0401 378 Pfam Signal peptide peptidase 51 255 IPR007369 GO:0004190|GO:0016021
Lal21g0401 378 Pfam Signal peptide peptidase 282 359 IPR007369 GO:0004190|GO:0016021
Lal21g0401 378 PANTHER SIGNAL PEPTIDE PEPTIDASE 1 281 378 - -
Lal21g0401 378 PANTHER SIGNAL PEPTIDE PEPTIDASE 1 1 255 - -
Lal21g0401 378 SMART psh_8 51 348 IPR006639 GO:0004190|GO:0016021
Lal21g0401 378 PANTHER SIGNAL PEPTIDE PEPTIDASE 281 378 IPR007369 GO:0004190|GO:0016021
Lal21g0401 378 PANTHER SIGNAL PEPTIDE PEPTIDASE 1 255 IPR007369 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0401 Lal-Chr21 2776491 2783057 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0401 K09595 - gmx:100784956 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0298 17 1863287 1869621 Lal21g0401 21 2776491 2783057 LSH
Lal21g0401 21 2776491 2783057 Lal4g0270 4 1735068 1740836 LSH