Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0343 ATGGGTAGGAAGGGAATTCAAGTATTCGATCACAAAAGAGATGGGTTTTTCTCTGTCTCCAATTTGGGGTGTGAAAACAATTTTTACCCAGGAGGCTTATTTGCCAGCGTTGGCCAAATGGGTATGGGTTTTGGTAGTAATGTTCAACCCAATAACCCTTCTGATAATGGTAATGGTAATGATGGTGGTTTGAATCTGAAACTTTGCTTTAATGAATTGTACTTCAAGTATGTGAAATCTCAAGGGAAAGTTCAAGTTGTTGGGGTTCCACTGGAGGAAGATGAGGAAGGGTTTAAGAGTAAGAAGAAAAAGGGTTTTGGTGGTGGTCTTAAGCTTAAGATTAAGGTCAAGAACCCTTCACTTAGGAGGTTGTTTAGTGGTGCTATTGCTGGGGCTTTGTCTCGAACCGCTGTGGCGCCATTGGAGACAATAAGGACTCATTTGATGGTTGGAAGTAGTGGCCATTCCACCACTGAGGTGTTCAATAATATCATCAATACTGATGGATGGAAAGGGTTGTTTAGGGGTAATTTCGTTAATGTCATTCGGGTTGCTCCTAGCAAAGCCATTGAGCTATTTGCCTACGATACTGTTAACAAGAACCTTTCAGCAAAGCCCGGGGAGCAGCCCAAACTCCCGATTCCTGCTTCATTGATTGCAGGTGCCTGTGCTGGAGTGAGTTCAACTATTTGCACATACCCCCTTGAATTACTTAAGACTCGCCTAACTATCCAGAGAGGTGTTTATGACGGTCTGCTTGACGCATTCTTGAAAATTATTCGAGAAGAGGGACCTGCGGAACTTTACAGAGGTCTCGCTCCCAGTCTAATCGGAGTCATTCCATATGCTGCCACAAATTACTTCGCCTACGACACTTTACGGAAAGCATACCGGAAAGCTTTTAAACAAGAGAAGATTGGCAACATTGAAACCCTTTTGATTGGATCAGCAGCTGGTGCTATTTCAAGCACTGCAACATTTCCTCTTGAGGTGGCTCGCAAGCACATGCAAGTTGGAGCTCTCAGTGGAAGGCAGGTATACAAAAATGTGATTCATGCACTCTCAAGCATACTAGAACAAGAAGGGGTGCAGGGTTTATATAGAGGTTTGGGACCTAGTTGCATGAAGTTGGTGCCGGCCGCCGGAATCTCTTTCATGTGCTATGAAGCATGCAAGAGGATCCTTATAGATGACGAGGATGAGGAATAG 1209 0.4417 MGRKGIQVFDHKRDGFFSVSNLGCENNFYPGGLFASVGQMGMGFGSNVQPNNPSDNGNGNDGGLNLKLCFNELYFKYVKSQGKVQVVGVPLEEDEEGFKSKKKKGFGGGLKLKIKVKNPSLRRLFSGAIAGALSRTAVAPLETIRTHLMVGSSGHSTTEVFNNIINTDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSAKPGEQPKLPIPASLIAGACAGVSSTICTYPLELLKTRLTIQRGVYDGLLDAFLKIIREEGPAELYRGLAPSLIGVIPYAATNYFAYDTLRKAYRKAFKQEKIGNIETLLIGSAAGAISSTATFPLEVARKHMQVGALSGRQVYKNVIHALSSILEQEGVQGLYRGLGPSCMKLVPAAGISFMCYEACKRILIDDEDEE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0343 402 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 296 IPR018108 -
Lal21g0343 402 PANTHER SOLUTE CARRIER FAMILY 25 23 401 - -
Lal21g0343 402 SUPERFAMILY Mitochondrial carrier 119 390 IPR023395 -
Lal21g0343 402 PRINTS Mitochondrial carrier protein signature 123 136 IPR002067 GO:0055085
Lal21g0343 402 PRINTS Mitochondrial carrier protein signature 136 150 IPR002067 GO:0055085
Lal21g0343 402 PRINTS Mitochondrial carrier protein signature 176 196 IPR002067 GO:0055085
Lal21g0343 402 PRINTS Mitochondrial carrier protein signature 227 245 IPR002067 GO:0055085
Lal21g0343 402 PRINTS Mitochondrial carrier protein signature 269 287 IPR002067 GO:0055085
Lal21g0343 402 PRINTS Mitochondrial carrier protein signature 315 337 IPR002067 GO:0055085
Lal21g0343 402 ProSiteProfiles Solute carrier (Solcar) repeat profile. 118 201 IPR018108 -
Lal21g0343 402 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 23 401 - -
Lal21g0343 402 ProSiteProfiles Solute carrier (Solcar) repeat profile. 306 394 IPR018108 -
Lal21g0343 402 Pfam Mitochondrial carrier protein 119 203 IPR018108 -
Lal21g0343 402 Pfam Mitochondrial carrier protein 212 299 IPR018108 -
Lal21g0343 402 Pfam Mitochondrial carrier protein 306 397 IPR018108 -
Lal21g0343 402 Gene3D Mitochondrial carrier domain 115 399 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0343 Lal-Chr21 2335554 2340067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0343 305 402 Organic Solute Cotransporters AT4G32400 34.000 9.18e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0343 K14684 - zju:107406946 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0343 21 2335554 2340067 Lal21g0343 21 2335554 2340067 ECH
Lal17g0236 17 1461458 1464644 Lal21g0343 21 2335554 2340067 LSH
Lal10g0020 10 231689 234848 Lal21g0343 21 2335554 2340067 PCT
Lal21g0343 21 2335554 2340067 Lal10g0020 10 231689 234848 PCT