Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0236 ATGGGTCGGAAGGGAATTCAAGTATTCGATGACAACAGAAATGGGGTTTTCTCCGTCTCCAATTTGGGCTCACAACAATGGAGTGAAAACAATGAAGGCCAATATTTTCACCCAGGAGGATTATTTGCCAGCGTTGGTCAAATGGGAATGGGATTTGGTAGTAATGTTCAACCCAATAACAATGATTCTCGCAACAACGATGGTAACGGTAATGACGGTGGCTTGAATCTCAAACTTTGCTTCAATGAGTTGTATTTCAAGTATGTTAAATCTCAGGGGAAAGTTCAGATTGTTGGAGTTCCAACGGAGGAAGAAGAGGAAAGGGTTAAGAGTAAGAAAAATGGTGGTGGTCTTAAGCTGAAGATTAAGGTCAAGAACCCTTCACTTAGGAGGTTATTTAGTGGGGCTATTGCTGGGGCTGTGTCACGAACCGCTGTTGCGCCATTGGAGACTATAAGGACTCATTTGATGGTTGGAAGTAGTGGCCATTCTACCACCGAGGTGTTCAATAATATTATCAATACTGATGGATGGAAGGGTTTGTTTAGGGGTAATTTCGTTAATGTTATTCGTGTTGCTCCTAGCAAGGCCATTGAGCTATTTGCTTATGATACAGTTAACAAGAACCTTTCACCGAAGCCTGGTGAGCAGCCCAAACTCCCTATTCCTGCATCATTGATTGCAGGTGCTTGTGCTGGAGTGAGTTCAACTATATGCACATATCCTCTCGAGTTACTCAAGACTCGACTAACTATCCAGAGAGGTGTTTATGATGGTCTGCTCGATGCGCTTGTGAAAATTATTCGTGAAGAGGGTCCTGGAGAGCTTTACAGAGGCCTTGCTCCCAGTCTTATTGGAGTGATTCCATATTCTGCCACAAATTACTTCGCATATGACACTTTAAGGAAAGCATACCGGAAAATATTTAAACAAGAGAAGATAGGCAACATTGAAACTCTTTTGATTGGATCAGCAGCTGGTGCTATTTCAAGCACTGCGACTTTTCCTCTTGAGGTGGCTCGCAAGCACATGCAAGTAGGAGCTCTCAGTGGAAGGCAAGTTTACAAAAATGTGATTCATGCACTTTCAAGCATACTTGAACAAGAAGGGATTCCGGGTTTATATAGAGGATTAGGACCAAGTTGCATGAAGTTAGTTCCGGCCGCTGGAATCTCTTTCATGTGTTATGAAGCATGCAAGAGGATACTTATAGATGATGGGGATGAGGAATAG 1233 0.4282 MGRKGIQVFDDNRNGVFSVSNLGSQQWSENNEGQYFHPGGLFASVGQMGMGFGSNVQPNNNDSRNNDGNGNDGGLNLKLCFNELYFKYVKSQGKVQIVGVPTEEEEERVKSKKNGGGLKLKIKVKNPSLRRLFSGAIAGAVSRTAVAPLETIRTHLMVGSSGHSTTEVFNNIINTDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQPKLPIPASLIAGACAGVSSTICTYPLELLKTRLTIQRGVYDGLLDALVKIIREEGPGELYRGLAPSLIGVIPYSATNYFAYDTLRKAYRKIFKQEKIGNIETLLIGSAAGAISSTATFPLEVARKHMQVGALSGRQVYKNVIHALSSILEQEGIPGLYRGLGPSCMKLVPAAGISFMCYEACKRILIDDGDEE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0236 410 Pfam Mitochondrial carrier protein 314 405 IPR018108 -
Lal17g0236 410 Pfam Mitochondrial carrier protein 127 210 IPR018108 -
Lal17g0236 410 Pfam Mitochondrial carrier protein 220 307 IPR018108 -
Lal17g0236 410 PRINTS Mitochondrial carrier protein signature 131 144 IPR002067 GO:0055085
Lal17g0236 410 PRINTS Mitochondrial carrier protein signature 144 158 IPR002067 GO:0055085
Lal17g0236 410 PRINTS Mitochondrial carrier protein signature 184 204 IPR002067 GO:0055085
Lal17g0236 410 PRINTS Mitochondrial carrier protein signature 235 253 IPR002067 GO:0055085
Lal17g0236 410 PRINTS Mitochondrial carrier protein signature 277 295 IPR002067 GO:0055085
Lal17g0236 410 PRINTS Mitochondrial carrier protein signature 323 345 IPR002067 GO:0055085
Lal17g0236 410 SUPERFAMILY Mitochondrial carrier 127 398 IPR023395 -
Lal17g0236 410 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 209 IPR018108 -
Lal17g0236 410 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 304 IPR018108 -
Lal17g0236 410 ProSiteProfiles Solute carrier (Solcar) repeat profile. 314 402 IPR018108 -
Lal17g0236 410 PANTHER SOLUTE CARRIER FAMILY 25 29 407 - -
Lal17g0236 410 Gene3D Mitochondrial carrier domain 123 406 IPR023395 -
Lal17g0236 410 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 29 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0236 Lal-Chr17 1461458 1464644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0236 1 409 Organic Solute Cotransporters AT4G32400 65.526 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0236 K14684 - qsu:111999876 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0236 17 1461458 1464644 Lal17g0236 17 1461458 1464644 ECH
Lal17g0236 17 1461458 1464644 Lal21g0343 21 2335554 2340067 LSH
Lal10g0020 10 231689 234848 Lal17g0236 17 1461458 1464644 PCT
Lal17g0236 17 1461458 1464644 Lal10g0020 10 231689 234848 PCT