Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1248 ATGGCGCTTTTACCTAAAAGCGATTCGATCCATATTCGTGAGGTGTGGAACGATAACCTTGAAGATGAATTCGCATTGATAATGGAAATCGTTGATGATTATCCTTACATTGCGATGGACACTGAATTTCCAGGGATTGTTGTTCGACCCATTGGGCATTTCAAGAATAGCTATGATGATCATTACCAAACCCTAAAGAATAATGTTGACATGCTCAAGTTGATTCAATTGGGTCTAACCTTTTCAGATGAGGAAGGGAATCTTCCTTTGTGTGGGACCAATAGTCACTGCATTTGGCAATTCAATTTCTGTGAATTCAATGTGAATGAGGATGTTTTCGCAAATGATTCGATCGAGCTTTTGAGACGGAGTGGCATTGATTTCAGGAAGAATAACGAGAAGGGTATCGATGCGAAGCGATTCGGTGAGATTTTGATGTCATCTGGGATTGTGTTGAATGATAATGTTCATTGGGTTACTTTCCATAGTGGCTATGATTTTGGGTATTTGTTGAAGCTTTTAACTTGTCAGAATTTGCCTGATACACAAGCTGGGTTCTTTAGCCTTATCAACATGTATTTCCCAATAGTTTATGACATAAAGCATCTGATGAAGTATTGTGATGGACTCCATGGAGGGTTGAACAAGCTTGCAGAGTTATTGGAGGTAGAGAGGGTTGGGATTTCGCATCAAGCCGGTTCCGATAGTTTGCTCACATCTTGGACATTCATGAAGTTGAAAGAGAATTTCTTTAGTGGATCTTTGGAGAAGTATGCTGGTGTTTTGTTTGGTTTAGGTGTTGAGAATGGACATAATTCTTCTCATTCAGGGAGAGTTTTTTTTTAA 846 0.3924 MALLPKSDSIHIREVWNDNLEDEFALIMEIVDDYPYIAMDTEFPGIVVRPIGHFKNSYDDHYQTLKNNVDMLKLIQLGLTFSDEEGNLPLCGTNSHCIWQFNFCEFNVNEDVFANDSIELLRRSGIDFRKNNEKGIDAKRFGEILMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCQNLPDTQAGFFSLINMYFPIVYDIKHLMKYCDGLHGGLNKLAELLEVERVGISHQAGSDSLLTSWTFMKLKENFFSGSLEKYAGVLFGLGVENGHNSSHSGRVFF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1248 281 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
Lal20g1248 281 Gene3D - 2 269 IPR036397 GO:0003676
Lal20g1248 281 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 273 IPR039637 GO:0004535|GO:0030014
Lal20g1248 281 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 6-RELATED 1 273 - -
Lal20g1248 281 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1248 Lal-Chr20 17008891 17009736 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1248 K12581 - tcc:18595416 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1248 20 17008891 17009736 Lal1g1218 1 13427053 13427880 LSH
Lal20g1248 20 17008891 17009736 Lal18g0044 18 318425 319252 LSH