Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1218 ATGTCGCTTTTACCTAAAAGCGATTCGATCCATATTCGCGAGGTGTGGGATGATAATCTGGAAGAGGAATTCGCGTTGATAAGGGAAATCGTTGATGATTACCCTTTCATTGCGATGGACACTGAATTTCCAGGGATTGTTCTTCGACCCGTTGGGAATTTCAAGAATAGTTACGATTTTCATTACCAAACCCTAAAAGATAATGTTGACATGCTGAAGTTGATTCAATTGGGTCTCACCTTCTCAGATGAGGAAGGGAATCTTCCGACATGTGGGACTAACAGTCAATGCATTTGGCAATTCAATTTCCGCGAATTCAATGTGAACGAGGATGTTTTCGCCAATGATTCCATCGAGCTTTTGAGACATTGTGGCATTGATTTCAGGAAGAACAATGAGATGGGTATCGATGCAAAGCAGTTCAGTGAGCTTTTGATGTCATCTGGGATTGTGTTGAATGATAATGTTCATTGGATTACTTTCCATAGTGGCTATGATTTCGGGTACTTGTTAAAGCTTTTAACTTGTCAAAATTTGCCCGATACCCAAGTTGGGTTTTTTAACCTCATCAACATGTATTTCCCAACTGTTTATGATATCAAGCATCTCATGAAGTTTTGCAATAGCCTTCATGGAGGTTTGAACAAGCTTGCTGAGTTGTTGGAGGTCGAGAGGGTGGGGATTTGTCATCAGGCCGGTTCAGACAGTTTGCTCACATCTTGTACATTTAGGAAGTTGAAAGAGAATTTCTTTAGTGGATCTTTGGAAAAATATGCTGGTGTTCTGTATGGCTTAGGTGATGAGAATGGACAGAGTTCTTCTCATTGA 828 0.4046 MSLLPKSDSIHIREVWDDNLEEEFALIREIVDDYPFIAMDTEFPGIVLRPVGNFKNSYDFHYQTLKDNVDMLKLIQLGLTFSDEEGNLPTCGTNSQCIWQFNFREFNVNEDVFANDSIELLRHCGIDFRKNNEMGIDAKQFSELLMSSGIVLNDNVHWITFHSGYDFGYLLKLLTCQNLPDTQVGFFNLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGVLYGLGDENGQSSSH 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1218 275 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 272 IPR039637 GO:0004535|GO:0030014
Lal1g1218 275 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 6-RELATED 1 272 - -
Lal1g1218 275 Pfam CAF1 family ribonuclease 157 219 IPR006941 -
Lal1g1218 275 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
Lal1g1218 275 Gene3D - 2 269 IPR036397 GO:0003676
Lal1g1218 275 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1218 Lal-Chr1 13427053 13427880 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1218 K12581 - twl:120007782 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1248 20 17008891 17009736 Lal1g1218 1 13427053 13427880 LSH
Lal1g1218 1 13427053 13427880 Lal18g0044 18 318425 319252 LSH