Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0044 ATGCCGCTTTTACCTAAAAACGATTCGATCCATATTCGTGAGGTTTGGAACGATAACCTGGAAGAGGAATTCGAGCTGATAAGGGAAATCGTCGATGATTACCCTTACATTGCAATGGACACTGAATTCCCAGGGATTGTTCTTCGACCAGTGGGGAATTTCAAAAATAGTTCCGATTATCATTACCAAACCCTAAAGGATAATGTTGATATGCTCAAGTTGATCCAATTGGGCCTCACCTTCTCAGACGAGGAAGGGAATCTTCCAACGTGTGGGACCGACTGTCAGTGCATTTGGCAATTCAATTTCCGTGAATTCAATGTGAATGAGGATGTTTTCGCCAACGATTCTATAGAGCTTTTGAGACAGAGTGGCATTGATTTCAAGAAGAATAATGAGATGGGTATGGATGCGAAGCGGTTTGGTGAGCTTTTGATGTCATCTGGGATTGTGTTGAATGATAATGTTCATTGGGTTACTTTCCATAGTGGCTATGATTTCGGATATTTGTTAAAGCTTTTAACTTGTCAGAATTTGCCTGATACCAAAGTTGGGTTTTTTAACCTTATCAACATGTATTTCCCTACTGTTTATGACATCAAGCATCTCATGAAGTTTTGTAATAGCCTTCATGGAGGGCTGAACAAGCTTGCAGAGTTGTTGGAGGTGGAGAGGGTTGGGATTTGTCATCAGGCCGGTTCGGATAGTTTGCTCACATCTTGTACATTCAGGAAGTTGAAAGAGAATTTCTTTAGTGGATCCTTGGAGAAGTATGCCGGTGTCTTGTACGGGTTAGGTGTTGAGAATGGACAAAGTTCTTCTCATTGA 828 0.413 MPLLPKNDSIHIREVWNDNLEEEFELIREIVDDYPYIAMDTEFPGIVLRPVGNFKNSSDYHYQTLKDNVDMLKLIQLGLTFSDEEGNLPTCGTDCQCIWQFNFREFNVNEDVFANDSIELLRQSGIDFKKNNEMGMDAKRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCQNLPDTKVGFFNLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGVLYGLGVENGQSSSH 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0044 275 Pfam CAF1 family ribonuclease 15 135 IPR006941 -
Lal18g0044 275 Gene3D - 2 269 IPR036397 GO:0003676
Lal18g0044 275 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 273 IPR039637 GO:0004535|GO:0030014
Lal18g0044 275 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 6-RELATED 1 273 - -
Lal18g0044 275 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0044 Lal-Chr18 318425 319252 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0044 K12581 - fve:101312566 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1248 20 17008891 17009736 Lal18g0044 18 318425 319252 LSH
Lal1g1218 1 13427053 13427880 Lal18g0044 18 318425 319252 LSH