Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1165 ATGGTTAGGGCACTAGAACAAGATCATGATAGTTATAGGTCCAAACTATTCAATTTTAAAGGGATGTTTGAAAACACAGGAGGAAGACATACAAAGAGTTTAAGCATCGAAAGTGCTACGAAATTAGAAAATCCTTCGGAAGAAGATGCAGTAACATCATCCTCTAAAAATCAAGGATCAAAACCTTTAAATAATAATTCTGATAAAGGTTCAAAGCCAAGAATAATAAGCAAGGAAGAATTTGCAGCTAAAGAAGCCAATGATAAACTATTACAAGAATTGGAACAGATGAAGGAGAGATTTGCAAAACTTCTATTAGGTGAGGATATGTCTGGTGGAGGAAAAGGTGTTTCATCAGCTTTGGCATTGTCAAATGCATTCACAAACCTTGCAGCTTTGGCATTCTCAAATGCATTCACAAATCTTGCAGCTGCTATTTTTGGTGAATCAAAGAGGTTAGAACCAATGCCACCAGAAAGAAAAGCAAGGTGGAGAAAAGAAATTGATTGGCTTCTATCAGTTACAGATTATATTGTTGAAATGGTTCCTTCACAACAAAAATCAAAGGATGGTTCAACCATGGAGATTATGACAACAAGACAAAGAAGGGATCTTCATATGAATATTCCTGCCTTGAGAAAGCTTGATACAATGCTCAATGATTGTCTAGATAACTTCAAAGGCCAAAGTGAATTCTATTATGTAAAAAAAGAAGAAGGTGATGCAGAAACAAACAATAAAAATGATGAAAAATGGTGGTTACCAACACCTAAGGTTCCTGAAGATGGTTTATCAGATGTGGCAAGAAAGTTTCTGCAATATCAAAAAGATTGTGTGACTCAAGTTCTTAAAGCAGCCATGGCCATAAATGCTCAAACTTTATCAGAAATGGAGATTCCTGAAAGCTATATTGAATCCTTACCCAAAAATGGAAGAGCAAGTCTAGGGGACTTAATATACAGGAGTATTACAGATGAATATTTTGATCCTGATCAGTTACTATGCACCATGGACTTATCATCAGAGCACAAAATTCTAGACCTCAAGAACAAAATCGAGGCATCGATTGTAATTTGGAGGCGAAAAATGAACCAAAAAGATTCAAAATCAGCTTGGGGTTCTGCTGTGAGTATGGAAAAAAGAGAATTGTTTGAGGAGAGAGCAGAAACTATCCTTCATCTCTTAAAGCATCGGTTCCCTGGGATCCCTCAATCTGCATTGGATATAAGCAAAATCCAATTCAATATGGATAACCCGCACGAACCGAACCCGAATTTAATGGGAAAAACCCGATGTGATTGGTTGCGGGTTCGGGTTTTACCCGAGTTCAACTTCCGGGATGTAGGACAAGCTGTCCTTGAAAGCTATTCAAGAATATTAGAAAGTTTGGCCTATACAGTTTTGTCAAGAATAGAAGATGTTCTAAATGCTGATTACCAAACTCAAAATCCAATACAACTAAGTAAAAGGAGTGCTATGAAAAACTCAACTTCAAAGTCAGAAAGGCCTATAACTCTTAGAGAAGAGGTAGTAACAGACAAAGTTGGCTTAGAAGAAATGCCTGCAGGTTCAATGACACTATCAGATTTCATGGGTTGGCTTGGTGAACATGGTGACTTAGAAATGAAGAAGGAATCTTATATAGTTCCAAATGAATTGGAAAATGAAGTTGGTGTTGGAAAAACTGAAAAAGTAGCAAATATATCAAGTGATAATAAGGTTTCATACCTTGAGAATTTGGGAGGTGTTAGAAATTCAACATGGAGTCAATAA 1773 0.3655 MVRALEQDHDSYRSKLFNFKGMFENTGGRHTKSLSIESATKLENPSEEDAVTSSSKNQGSKPLNNNSDKGSKPRIISKEEFAAKEANDKLLQELEQMKERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAALAFSNAFTNLAAAIFGESKRLEPMPPERKARWRKEIDWLLSVTDYIVEMVPSQQKSKDGSTMEIMTTRQRRDLHMNIPALRKLDTMLNDCLDNFKGQSEFYYVKKEEGDAETNNKNDEKWWLPTPKVPEDGLSDVARKFLQYQKDCVTQVLKAAMAINAQTLSEMEIPESYIESLPKNGRASLGDLIYRSITDEYFDPDQLLCTMDLSSEHKILDLKNKIEASIVIWRRKMNQKDSKSAWGSAVSMEKRELFEERAETILHLLKHRFPGIPQSALDISKIQFNMDNPHEPNPNLMGKTRCDWLRVRVLPEFNFRDVGQAVLESYSRILESLAYTVLSRIEDVLNADYQTQNPIQLSKRSAMKNSTSKSERPITLREEVVTDKVGLEEMPAGSMTLSDFMGWLGEHGDLEMKKESYIVPNELENEVGVGKTEKVANISSDNKVSYLENLGGVRNSTWSQ 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1165 590 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 132 418 IPR038937 GO:0005085
Lal20g1165 590 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 444 587 IPR038937 GO:0005085
Lal20g1165 590 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 92 135 IPR038937 GO:0005085
Lal20g1165 590 Coils Coil 80 107 - -
Lal20g1165 590 PANTHER RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 132 418 - -
Lal20g1165 590 PANTHER RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 92 135 - -
Lal20g1165 590 PANTHER RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 444 587 - -
Lal20g1165 590 MobiDBLite consensus disorder prediction 38 71 - -
Lal20g1165 590 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 446 482 IPR005512 GO:0005085
Lal20g1165 590 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 131 417 IPR005512 GO:0005085
Lal20g1165 590 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 93 135 IPR005512 GO:0005085
Lal20g1165 590 ProSiteProfiles PRONE domain profile. 84 488 IPR005512 GO:0005085
Lal20g1165 590 MobiDBLite consensus disorder prediction 38 74 - -
Lal20g1165 590 Gene3D PRONE domain, subdomain 1 84 132 - -
Lal20g1165 590 Gene3D PRONE domain, subdomain 1 133 332 - -
Lal20g1165 590 Gene3D PRONE domain, subdomain 1 333 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1165 Lal-Chr20 16108449 16113041 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1165 - - gmx:100812078 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1165 20 16108449 16113041 Lal1g1318 1 14897690 14901246 LSH
Lal20g1165 20 16108449 16113041 Lal18g0180 18 1478930 1481961 LSH