Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1146 ATGCATTCTCTCCAGGGATTATTGGATGAACAATTTATCCAACTTGAAGAATTGCAGGATGCTGCTAATCCTAACTTTGCAGAAGAAATTGTCACTCTTTACTATCGTGATTCATCTCGGCTTATCACGAACATAGAACAAGCACTCAAGGAGAGGAATGGATTGGATTTCAATAAGCTGGACAATATAATGCATCAGTTCAAAGGAAGCAGTTCAAGCATTGGAGCCAAAAAGGTGAAAGCAGAATGCACTATGTTTAAGGAATGCTGTAGGACAAGAAATGCAGAAGGATGCATGAGGAGCTTCCAACAATTGAAGAAAGAATATGCTGCACTGAGAAAGAAACTTGAAGCTTATTTTCAGGTTACTACTAGAGTACAAAAGTTGTGTTTTAGTGTCGCAAACCATGTTTCAAATCTTGTCTCACACCAATGA 435 0.3839 MHSLQGLLDEQFIQLEELQDAANPNFAEEIVTLYYRDSSRLITNIEQALKERNGLDFNKLDNIMHQFKGSSSSIGAKKVKAECTMFKECCRTRNAEGCMRSFQQLKKEYAALRKKLEAYFQVTTRVQKLCFSVANHVSNLVSHQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1146 144 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 4 5 126 - -
Lal20g1146 144 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 23 119 IPR008207 GO:0000160
Lal20g1146 144 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 6 122 IPR036641 GO:0000160
Lal20g1146 144 PANTHER - 5 126 IPR045871 GO:0000160|GO:0009927|GO:0043424
Lal20g1146 144 Coils Coil 95 122 - -
Lal20g1146 144 Pfam Hpt domain 29 113 IPR008207 GO:0000160
Lal20g1146 144 Gene3D HPT domain 1 136 IPR036641 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1146 Lal-Chr20 15887943 15889108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1146 K14490 - gmx:100526849 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1146 20 15887943 15889108 Lal20g1146 20 15887943 15889108 ECH
Lal20g1146 20 15887943 15889108 Lal17g0330 17 2095634 2098777 ECH
Lal25g0307 25 2104236 2107477 Lal20g1146 20 15887943 15889108 PCT
Lal20g1146 20 15887943 15889108 Lal25g0307 25 2104236 2107477 PCT