Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0361 ATGGAAAAGTGGCACAAGAATTTGAACATGAATCAAGGTTGTGGAATTAGTACTGATTTAGAGACCAGTTACACTGCTAGAATCATGGTCTTACTGTACTTCATTTACCAGCTTTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGAGACATGATCACTTAATACTAAGAATAATAAATGATGTTCAACAGAATACCCTGCAAAGATTCTCACCAAGCATGGTGCTCCAAATGCTATATAAAGAAATAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAATAAAAGATCTTTTGCTTAAAAACAAAGTGAATGAAACAAATCAGAAAGAAGTAGAAGATGTGTTACAAATATTTGATAGGAATAATGACCAAAAAATAACTAAGGAAGAATTTGTAAGTGGCTTTGCAAAATGGCTTGATCAAACAAAGCATGCTTTAGGCAAACAATATTTTTCAAGGAAATCACTCAAGGAGGTTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACATGAAGGGAAGAAACAACTTATAACTGAAATCTTAAGACATGTTCAAATTGATATGGTTGGTAACCTTCTTACAGCAGATGGTAAACCTGATGAACAAGCCCTCAGAGGAGAAGCAACTTCAGCAATCAAAGAAGTGAGCCATAAGAAGCCAAGAACTACTTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTCATGAATAACATCCTTGGGTTCTTTGCAATCTCAATTCTGATCTATGTGAGAAAAGTGACATGGGAATTCTCAGCTGAATTGTTGTGTTCTCAATTATACTTGACACCATTTAGAGCTATGTTGAGAGGAATATGA 855 0.352 MEKWHKNLNMNQGCGISTDLETSYTARIMVLLYFIYQLFEPWVQKRRLEYVRHDHLILRIINDVQQNTLQRFSPSMVLQMLYKEIDQDGSSGISASEIKDLLLKNKVNETNQKEVEDVLQIFDRNNDQKITKEEFVSGFAKWLDQTKHALGKQYFSRKSLKEVFGPWIENKRKEHEGKKQLITEILRHVQIDMVGNLLTADGKPDEQALRGEATSAIKEVSHKKPRTTSLAISEIYGGVFMNNILGFFAISILIYVRKVTWEFSAELLCSQLYLTPFRAMLRGI 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0361 284 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 30 155 - -
Lal20g0361 284 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 163 210 - -
Lal20g0361 284 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 212 269 - -
Lal20g0361 284 Pfam EF-hand domain pair 77 137 IPR002048 GO:0005509
Lal20g0361 284 Gene3D - 2 157 - -
Lal20g0361 284 CDD EFh 78 140 IPR002048 GO:0005509
Lal20g0361 284 SUPERFAMILY EF-hand 76 144 IPR011992 -
Lal20g0361 284 ProSiteProfiles EF-hand calcium-binding domain profile. 110 145 IPR002048 GO:0005509
Lal20g0361 284 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 30 155 - -
Lal20g0361 284 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 163 210 - -
Lal20g0361 284 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 212 269 - -
Lal20g0361 284 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Lal20g0361 284 SMART efh_1 77 105 IPR002048 GO:0005509
Lal20g0361 284 SMART efh_1 114 142 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0361 Lal-Chr20 2899386 2902944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0361 28 268 EF-hand Containing Proteins AT1G53210 30.690 3.76e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0361 - - aprc:113855499 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0614 2 3650432 3655774 Lal20g0361 20 2899386 2902944 ECH
Lal20g0361 20 2899386 2902944 Lal20g0361 20 2899386 2902944 ECH
Lal20g0361 20 2899386 2902944 Lal1g1627 1 18693649 18699095 LSH