Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1627 ATGGCTTCTTCTAACCACACTCTCTTCCTCTTCCTCTCACTCCTTATCCTCTGCGGTAACGTCCATTCTCGTGATCTACTCTCCGATGGGGTCCACACAGATTCAACCTTCATCAACGACACATATCTCAGACTCCCATCATACACAGTGGAACCTTCTTCCACGTGTGAACAGACCTATGGATTCTTACCGTGCACCACCACCGTGTTAGGAAACTTGTTCCTCATAATTGTCTATGGATTTCTTATGTATACTGCTGCTACTTACTTATCTGGTGGTAGTGAACTTTTGCTTGAGATCTTGGGTCCTGGCATCGTTGGTGGTTTGTTTCTTCCTATTCTCGGTGCTCTTCCTGATGCCATGCTTATTCTCGTATCTGGGCTTTCAGGTAGTAAAGAAACTGCTCAAAGTCAGGTCTCTGTTGGAATTGGACTGCTAGCTGGGTCAACAGTTCTGCTTCTGACTATAATATGGGGGACCTGTGTAATTGTTGGCAAGTGTGACATTGAGGATTCAATTGCAATTGATACACAAGATACTAGAGGATTTCATTTAACTCGTTCTGGTGTTAGTACTGATATCTGGACAAGTTATGCTGCTAGGATCATGGTTTTATCTGTCCTTCCATTTTTGATTGTTCAGTTACCACAAATGCTCAATTCAACTCCGGCGAGGCACTTGGCTGTTTTGATTGCTCTTATTGTCTCCATCTGTTTAATGATTACTTATTGCTTTTACCAGATTTTCCAGCCATGGATACAGAGGAGAAAACTTTCATATGTTAAACACAAGCATGTTATTTTAGGACTTTTGAAACATTTGAAGCAACATGCATTGGGAAGGCTGCTGACAGACAATGGTGAACCTGACGTAAAAATTATAGAAAAGTTGTTTGATACAATTGATGAGAATAAGGATGGTGAACTTTCTTTTCGTGAATTGAAAGCACTGGTTGTTGGAATTCAATTTGAGGAGATTGACCTGGATCATGAAGATGCTGTGATAAAAATAATGGAGGACTTTGATGCTTCTCATAATAACCGTGTTGATAAAAAGGAATTTGTTAATGGCACTTGTAAATGGCTTCAAAAGGCGAAGGGTTCTCGAGTTGCATCTGGTGATGGCGGTGCACGCACAATGAAGTTTTTAAGTGATTTTCACGATGAAACAAATAGGGAGCATGATCTTCTTTATGTGGGGGGTGAAAGTGAAGAAGTTGTTGAAGGTGTTGGAAATGCTCGATGGACTACCGTCAAAGCAGTGCTGCTGCTGGTGCTGGGATCTCTTATTGCTGCTGCATTTGCTGATCCTTTGGTTGATGCAGTTGATAACTTTTCTAATGCTTCAAGTATTCCTGCTTTTTTCATTTCCTTCATTGCTCTGCCTTTGGCCACCACTTCAAGTGAAGCGGTGTCGGCAATAATTTTCGCTAGTCGTGATAAGAGGCAGACTGCCTCACTAACATTTTCCGAGATATATGGGGCAGTGACAATGAACAATGTGCTTTGCCTAGCTGTCTTCTTGGCCCTGGTTTACGCTAGGGGGTTGACATGGGACTTCTCTTCGGAAGTGTTAGTTATTCTCGTCGTCTCCATCGTCATGGGTGCCTTCGCCAGTTTCAGAACCACCTTCCCTCTATGGACATCTATACTAGCTATCCTCCTTTATCCCTTCTCCTTGGCATTAGTATATGTTCTTGATTATGTATTAGGTTGGTCATAG 1722 0.4216 MASSNHTLFLFLSLLILCGNVHSRDLLSDGVHTDSTFINDTYLRLPSYTVEPSSTCEQTYGFLPCTTTVLGNLFLIIVYGFLMYTAATYLSGGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVSVGIGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIAIDTQDTRGFHLTRSGVSTDIWTSYAARIMVLSVLPFLIVQLPQMLNSTPARHLAVLIALIVSICLMITYCFYQIFQPWIQRRKLSYVKHKHVILGLLKHLKQHALGRLLTDNGEPDVKIIEKLFDTIDENKDGELSFRELKALVVGIQFEEIDLDHEDAVIKIMEDFDASHNNRVDKKEFVNGTCKWLQKAKGSRVASGDGGARTMKFLSDFHDETNREHDLLYVGGESEEVVEGVGNARWTTVKAVLLLVLGSLIAAAFADPLVDAVDNFSNASSIPAFFISFIALPLATTSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLAVFLALVYARGLTWDFSSEVLVILVVSIVMGAFASFRTTFPLWTSILAILLYPFSLALVYVLDYVLGWS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1627 573 ProSitePatterns EF-hand calcium-binding domain. 342 354 IPR018247 -
Lal1g1627 573 CDD EFh 294 357 IPR002048 GO:0005509
Lal1g1627 573 PANTHER SODIUM/CALCIUM EXCHANGER NCL 12 568 - -
Lal1g1627 573 SMART efh_1 293 321 IPR002048 GO:0005509
Lal1g1627 573 SMART efh_1 333 361 IPR002048 GO:0005509
Lal1g1627 573 Pfam EF hand 294 318 IPR002048 GO:0005509
Lal1g1627 573 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 12 568 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lal1g1627 573 Pfam Sodium/calcium exchanger protein 420 564 IPR004837 GO:0016021|GO:0055085
Lal1g1627 573 Pfam Sodium/calcium exchanger protein 74 250 IPR004837 GO:0016021|GO:0055085
Lal1g1627 573 SUPERFAMILY EF-hand 275 496 IPR011992 -
Lal1g1627 573 Gene3D - 270 388 - -
Lal1g1627 573 ProSitePatterns EF-hand calcium-binding domain. 302 314 IPR018247 -
Lal1g1627 573 ProSiteProfiles EF-hand calcium-binding domain profile. 289 324 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1627 Lal-Chr1 18693649 18699095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1627 20 573 EF-hand Containing Proteins AT1G53210 66.310 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1627 - - gmx:100809896 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1627 1 18693649 18699095 Lal1g1627 1 18693649 18699095 ECH
Lal20g0361 20 2899386 2902944 Lal1g1627 1 18693649 18699095 LSH