Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0231 ATGTTAAGCGTTTTACGCGTTCACCTTCCTTCTGATATTCCAATTATTGGTTGTGAACTCACACCTTATGTCCTTCTTCGCCGCTCTGATAACAACTTTACCACCGATGATGTTCCTGAAACTGCTCCATTACAAGGCCATTTTCTAAGTTATAAGTGGTATCGTGTACAAAGTGATAAAAAGGTTGCTATATGTAGTGTACATCCATCCGAGCTGGCCACACTGCAGTGCATAGGTTGTGTTAAGGCCAAAATACCTGTTGCCAAAAGTTACCATTGCACTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACATGATCGTGCTGCAAGTGCAGTTAGTGAAAATGGCAATGAGGAGGAGGAGGTGTTTGGCAGATTTAATAATTCTGTGTCAAGTGCTAGCTTGACAAATGGGTCTGCACCTATGTATCCAGCAGCTGTTACACAAAGAAATGGTGGTGAAACTTGGTTTGAAGTTGGACGGTCTAAGACATATACCCCAACAGCTGATGACATTGGTCATGTCCTTAAGTTCGAGTGTGTTGTAGTTGATGCCGAGACAAAACTTCCAGTGGGGTATGCTAACACTTTACTAACTTCCCGTGTCATTCCTGCTCCCTCGCCTAGCCCACGCCGCATGATACCTGTTGACGGGATGGGGCATTTAGATGCAGATGGACGTATAACATCATCAGGAACTTTTACCGTTTTATCATACAACATATTGTCTGATGCATGTGCCTCAAAAAGTGATCTATACAGTTACTGCCCCTCTTGGGCTCTCTCCTGGCCATATCGCAGACAAAATTTGTTACGGGAAATAGTTGGTTACTGTGCAGATATTATCTGTCTTCAGGAGATTCAAAGTGACCACTATGAGGAGTTTTTTTCTCCTGAATTGGACAAGCATGGCTATTATGGTCTTTACAAGAGAAAAACAAAAGAGGTATACAACGGCAACCCCAATAAAATCGACGGTTGTGCAACATTTTTCCGCAGAGACAGATTTTCACATGTGAAGAAATACGAGGTTGAATTCAATAAGGCTGCACAGTCTTTAACAGATGCTATCATTCCACCCAATCTGCAGACAGCTGCCTTAAATCGGCTGGTTAAGGATAATGTTGCACTAATAGCGGTTCTAGAAGCCAAAGTTAACAATCCGCCTGTTGATAGCCCAGGGAAAAGACAGCTTCTTTGTGTGGCAAATACACATATAAATGTCCCCGAGGATTTAAAGGATGTCAAACTCTGGCAGGTGCATACTCTCTTAAAAGGATTGGAGAAAATAGCTGCAAGTGCAGACATTCCAATGTTGGTTTGTGGAGACTTTAATTCAGTTCCAGAAAGTGCACCTCATGCACTTCTTGCAATGGGGAAGGTTGATGCATCACATCCTGATTTAGCAGTTGATCCGCTTAACATATTGCATCCTCTCAACAGATTGGCTCACCAATTGCCACTGGTAAGTGCATATTCATCTTTTGCAAGAACTGTTGGTCTCGGATTTGAGCAGCATAAACGGAGACTGAACATCACAACAAATGAGCCATTATTCACACACTTCACTAGAGATTTTATCGGCTCTCTAGATTACATATTTTATACAGCGGATTCATTGGTTGTGGAGTCATTACTGGAGTTATTGGACGAGGAGAGTTTAAGGAAAGACACAGCACTCCCTTCTCCCGAATGGTCTTCCGATCATTTAGCTCTCTTAGCTGAGTTTCGCTGCTGCAAAAATAGATATAGGCGTTGA 1770 0.4254 MLSVLRVHLPSDIPIIGCELTPYVLLRRSDNNFTTDDVPETAPLQGHFLSYKWYRVQSDKKVAICSVHPSELATLQCIGCVKAKIPVAKSYHCTPKCFSDAWQHHRVLHDRAASAVSENGNEEEEVFGRFNNSVSSASLTNGSAPMYPAAVTQRNGGETWFEVGRSKTYTPTADDIGHVLKFECVVVDAETKLPVGYANTLLTSRVIPAPSPSPRRMIPVDGMGHLDADGRITSSGTFTVLSYNILSDACASKSDLYSYCPSWALSWPYRRQNLLREIVGYCADIICLQEIQSDHYEEFFSPELDKHGYYGLYKRKTKEVYNGNPNKIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAIIPPNLQTAALNRLVKDNVALIAVLEAKVNNPPVDSPGKRQLLCVANTHINVPEDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPESAPHALLAMGKVDASHPDLAVDPLNILHPLNRLAHQLPLVSAYSSFARTVGLGFEQHKRRLNITTNEPLFTHFTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHLALLAEFRCCKNRYRR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0231 589 Pfam Endonuclease/Exonuclease/phosphatase family 241 573 IPR005135 GO:0003824
Lal20g0231 589 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 584 - -
Lal20g0231 589 SUPERFAMILY DNase I-like 234 583 IPR036691 -
Lal20g0231 589 CDD Deadenylase_CCR4 240 582 - -
Lal20g0231 589 Gene3D Endonuclease/exonuclease/phosphatase 207 588 IPR036691 -
Lal20g0231 589 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0231 Lal-Chr20 1617197 1622507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0231 234 460 EF-hand Containing Proteins AT5G54130 24.380 4.08e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0231 K12603 - gmx:100775270 1047.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0231 20 1617197 1622507 Lal20g0231 20 1617197 1622507 ECH
Lal11g1305 11 16700945 16707832 Lal20g0231 20 1617197 1622507 LSH
Lal20g0231 20 1617197 1622507 Lal13g1206 13 10348496 10358836 PCT
Lal13g1206 13 10348496 10358836 Lal20g0231 20 1617197 1622507 PCT