Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1305 ATGCTGAGCGTGCTGCGTGTGCATCTTCCATCTGATATTCCCATTGTAGGTTGTGAACTCACACCTTACGTTCTCCTTCGTCGCCCTGATAAGACTGTTACTACCGATGATCTTTCCCAATTTTCACCATTAGATGGACATTTTCTCCGATACAAGTGGTTGCATTTTATAGCAGAAAACACATTGACCTCTTTGAGGTTAAGGTATCGTGTACAAAGTGATAAAAAGGTTGCTGTATGTAGTGTTCATCCATCCGAGCAGGCCACACTGCAGTGCATAGGTTGTGTTAAGGCCAAAATACCTGTTGCTAAAAGTTATCATTGCACTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACACGACCGTGCTGCAAGTGCAGTTAATGAAAATGGAAACGAGGAGGAGGAGGTATTTGGGAGATTTAATAATTCTGGGTCTGGATCATTAACCAGCTTATCTGCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCACCTTTGTATCCAGCAGCTGTTACACAACGAAATGGTGGTGAAACTTGGTTTGAAGTCGGACGATCTAAGACATATACCCCAACAGCTGATGACATTGGTCATGTCCTTAAGTTTGAGTGTGTTGTAGTTGATGCTGAGACAAAACTTCCAGTGGGGTATGCTAACACTTTACTAACTTCTCGGGTCATTCCCGCGCCCTCGCCTAGCCCACGCCGCATGGTACCTGTTGACGGGATGGGGCAATTAGATGCAGATGGACGCATAACATCTTCAGGAACTTTTACTGTCTTATCATACAACGTATTGTCTGATGCATATGCCTCAAATGATCTATACAGTTACTGCCCTTCTTGGGCTCTCTCTTGGCCATACCGCAGGCAAAATCTGTTACAAGAAATCGTTGGTTACCGTGCGGATATTATCTGTCTTCAGGAGATTCAAAGTGACCACTATGAGGAATTTTTTTCCCCTGAATTGGACAAACATGGCTATTATGGTCTTTACAAGAGAAAAACAAATGAGGTTGTTACAGTATACAATGGCGACACAAATAAAATCGATGGTTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAATTCAATAAGGCTGCACAGTCTTTAACAGATGCTATGATTGCACCCGCACAGCAGAAAACTGCCCTGAATAGGCTGGATAATGTTGCACTCATAGTGGTTCTAGAAGCAAAAGTTAACAATCAGCCTGTTGATAGTCCAGGAAAAAGACAGCTTCTTTGTGTGGCAAACACACATGTAAATGTCCACCAGGATTTAAAGGATGTCAAACTCTGGCAGGTGCATACTCTCTTAAAGGGATTGGAGAAAATAGCTGCAAGTGCAGACATTCCTATGTTGGTTTGTGGAGACTTTAATTCAGTTCCTGGAAGTGCACCTCATGAACTTCTTGCAATGGGGAAGGTAGATCCATCACATCCCGATTTAGCAGTTGATCCACTTAACATATTGCGTCCTCTCAACAGATTGGTTCACCAGTTGCCACTGGTTAGCGCATATTCATCTTTTGCAAGAACTGTTGGTCTTGGACTTGAGCAGCATAAACGAAGACTGGACAGCACAACGAATGAGCCTTTATTCACACATGTCACTAGAGATTTTATCGGCTCTCTGGATTTCATATTTTATACAGCGGATTCATTGGTTGTGGAGTCATTACTCGAGTTATTGGACGAGGAGAGTTTAAGGAAAGACACAGCACTTCCTTCCCCGGAATGGTCCTCCGATCATATAGCTCTCTTAGCTGAATTTCGCTGCTGCAAAAATAGATCTAGGCGTTGA 1848 0.4302 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDLSQFSPLDGHFLRYKWLHFIAENTLTSLRLRYRVQSDKKVAVCSVHPSEQATLQCIGCVKAKIPVAKSYHCTPKCFSDAWQHHRVLHDRAASAVNENGNEEEEVFGRFNNSGSGSLTSLSASASSASLTNGSAPLYPAAVTQRNGGETWFEVGRSKTYTPTADDIGHVLKFECVVVDAETKLPVGYANTLLTSRVIPAPSPSPRRMVPVDGMGQLDADGRITSSGTFTVLSYNVLSDAYASNDLYSYCPSWALSWPYRRQNLLQEIVGYRADIICLQEIQSDHYEEFFSPELDKHGYYGLYKRKTNEVVTVYNGDTNKIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMIAPAQQKTALNRLDNVALIVVLEAKVNNQPVDSPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHELLAMGKVDPSHPDLAVDPLNILRPLNRLVHQLPLVSAYSSFARTVGLGLEQHKRRLDSTTNEPLFTHVTRDFIGSLDFIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1305 615 CDD Deadenylase_CCR4 266 608 - -
Lal11g1305 615 SUPERFAMILY DNase I-like 260 609 IPR036691 -
Lal11g1305 615 Pfam Endonuclease/Exonuclease/phosphatase family 267 599 IPR005135 GO:0003824
Lal11g1305 615 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 58 610 - -
Lal11g1305 615 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 58 610 - -
Lal11g1305 615 Gene3D Endonuclease/exonuclease/phosphatase 233 614 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1305 Lal-Chr11 16700945 16707832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1305 K12603 - gmx:100808935 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1305 11 16700945 16707832 Lal11g1305 11 16700945 16707832 ECH
Lal11g1305 11 16700945 16707832 Lal20g0231 20 1617197 1622507 LSH
Lal11g1305 11 16700945 16707832 Lal13g1206 13 10348496 10358836 PCT
Lal13g1206 13 10348496 10358836 Lal11g1305 11 16700945 16707832 PCT