Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0224 ATGTCCATATTATCAGGCATGGATACACCAACGATTGATGTGGACCTCGGCGAGCCGGAGAAAGTTGAAGAGGTGAAAGAGGGAGATCCATTGTTCCAATGTGATCTTTGTGATACAGAAGTAATTCACAAGTTGGCTCAGATGTTGCTTCCGGGACTTGCTTCGGCTTGTGTTGACAACACATCAGGAGGTCTCTTCAAGACTCCTGGTTCAGTGGCTGATGATTTGAGAAAGGAAATGATAGATTATGTTACCCAGAGAAGCGAATCGTTCGTTGCCGAGTCTGTCATATTGGAAGGTGGTCCAGATGGTGAAGTATCAGATCATCCTTTTGATATCATTTCTAACATGGTTGATGACTTTGTGAGTTTAAAGAGGAATTTTTTTAGTCGTGTTTCGGGATGGCTATTAAGTGAAAGGAGGGAAGACAAGATAGAGGATTTTGTTCAAGAGATGGAAAGGAAAGGTTTTTGGACTCTAGATAGAAGAGAAACAATTGCAGAAACTTTCCTTAAGAATGTTGATTTTGAGAACAAATTTCATTGTGGTATGAAGATTAATTCTCTTGAAGAGCTTTCCAATCATGTTGGTGAGTGCAACTTTAGATCTATATTCTGCGAAAACGAGGGATGTAATGCCAGATTTTGTGCAAGTCATCAGAAGCAGCATGACTCAACTTGTTCTTTCAAGATTATTCCGTGTGAACAGAGATGTTCGGATAACATTATGAGACGTGACATGGATAGGCACTGTATAACTGTGTGTCCCATGAAGCTTGTAAACTGTCCTTTTCATGTCGTGGGTTGTCGCTCTGCCATTGTGCAATGTATGATTGATAAACATCGTTCCGATGATGTTCATTCTCATTTGTGGCATCTGCTTAAAGGCACACACAAGCAAGCAAATGGCGAAGATCTTCAACGACGAGTAGAGGAAATTCTGCAGGCTGAATCAAGCAGCCGATTAGCTCAGGCTCGGGATGTGAGATCTTTAAACTTAATTGTCAATGATATCGAAGCTAAGCTTGGGCCTATGAAGGTGAGCGCCATGGGAAAACTTAGTGCAGAGACTGTTATCAAGAATGCTGATGGGGAGGTTGGTGACACCGATACGAAGGGCAATAAACAGAGCACACAGGACTCAGATATGGTAAGTTCATTAGGTAAAGCTGACAACGGCGACATTGTGAATATATACAGTGCAGAGAATACTGCCATGACTGAGGATAGCGAGCATAGTCAGATCGAAAACAAGGGTAGTGAAGAGATGACACAAACATCAAATATGGTAAATCCATCCTATAAAGCCGAGGATACCACTAAGGATGATGATAGTGAACAGGGTCGCGATGAAAACAAGGACAGCGAAGAGAGGATACATACTTCCGATGTGATTAATTTAGTTGATAAAGCAGAAACTAATGTCACAAACGACAATGGCACACAGGTTCACAAGGAGAACCAAGATGCCCCAACTAGTGAAATACTTAAGGGCAACAAAGAGAGCACCCAGACAAATTTGGAAAAAGTATCATATCAAGGAGAAATCAGTGCCATAAATGAGGACAATGCAGAGACAACTGGTTCAAACAAATATATTGAAGAGAGCAGCAACTTTGAAGATAAGGATAAGGACAAAGACATTCAAAATTCAGAAGTGGATACTAAGGGCACTGCAGAGAATATTGTTAAGAACAAAGACACAGAATATGATGGCTTAAAAGAGAGCATACAAAGTTCAAAGGTGCAAAATGTATCAGACTAA 1764 0.4087 MSILSGMDTPTIDVDLGEPEKVEEVKEGDPLFQCDLCDTEVIHKLAQMLLPGLASACVDNTSGGLFKTPGSVADDLRKEMIDYVTQRSESFVAESVILEGGPDGEVSDHPFDIISNMVDDFVSLKRNFFSRVSGWLLSERREDKIEDFVQEMERKGFWTLDRRETIAETFLKNVDFENKFHCGMKINSLEELSNHVGECNFRSIFCENEGCNARFCASHQKQHDSTCSFKIIPCEQRCSDNIMRRDMDRHCITVCPMKLVNCPFHVVGCRSAIVQCMIDKHRSDDVHSHLWHLLKGTHKQANGEDLQRRVEEILQAESSSRLAQARDVRSLNLIVNDIEAKLGPMKVSAMGKLSAETVIKNADGEVGDTDTKGNKQSTQDSDMVSSLGKADNGDIVNIYSAENTAMTEDSEHSQIENKGSEEMTQTSNMVNPSYKAEDTTKDDDSEQGRDENKDSEERIHTSDVINLVDKAETNVTNDNGTQVHKENQDAPTSEILKGNKESTQTNLEKVSYQGEISAINEDNAETTGSNKYIEESSNFEDKDKDKDIQNSEVDTKGTAENIVKNKDTEYDGLKESIQSSKVQNVSD 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0224 587 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 363 - -
Lal20g0224 587 MobiDBLite consensus disorder prediction 518 534 - -
Lal20g0224 587 SUPERFAMILY TRAF domain-like 205 282 - -
Lal20g0224 587 MobiDBLite consensus disorder prediction 371 386 - -
Lal20g0224 587 MobiDBLite consensus disorder prediction 535 567 - -
Lal20g0224 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 287 IPR013083 -
Lal20g0224 587 MobiDBLite consensus disorder prediction 518 567 - -
Lal20g0224 587 ProSiteProfiles Zinc finger TRAF-type profile. 218 270 IPR001293 GO:0008270
Lal20g0224 587 MobiDBLite consensus disorder prediction 364 390 - -
Lal20g0224 587 MobiDBLite consensus disorder prediction 405 505 - -
Lal20g0224 587 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 363 IPR043211 -
Lal20g0224 587 MobiDBLite consensus disorder prediction 467 505 - -
Lal20g0224 587 MobiDBLite consensus disorder prediction 419 435 - -
Lal20g0224 587 MobiDBLite consensus disorder prediction 436 465 - -
Lal20g0224 587 Pfam TRAF-type zinc finger 223 281 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0224 Lal-Chr20 1565870 1569363 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0224 - - lang:109347097 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0224 20 1565870 1569363 Lal20g0224 20 1565870 1569363 ECH
Lal11g1302 11 16681256 16684532 Lal20g0224 20 1565870 1569363 LSH
Lal1g1712 1 19566939 19570661 Lal20g0224 20 1565870 1569363 LSH