Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1302 ATGTCGATATTATCAAGCATGGATCTGCCTACGATTGACGTGGACCTCGGTGGACCAGAGAAAATTGAAGAGGTGAAAGAGAGAGGTCAATGCTTCCGTTGTGATCTTTGTGATACAGAAGTAATTCACAAGTTGGCTCAGATGTTCCTTCCGGGACTTGCTTCGGCGTGTGTTGACAGCACATCGGGAGATCTCTTCAGGACGCCTGGTTCAGTGGCTGATGATTTGAGAAAGGAAATGATAGATTATGTTACCCAGAGAAGTGAATCATTTGTTGCCGAGTCTATTATCTTGGAGGGTGGTCCGGACGGTGAAGTATCAGATCATCCTTTGGATATCATTTCTAATTTGGTTGATGACTTTGTGAGCTTAAAGAGGAATTTCTTTAGTCGTGTTTCAGGGTGGCTGTTAAGTGAAAAAAGGGAAGACAAGATAGAGGATTTCATTCAAGAGATGGAAATGAATGGTTTTTGGACTTTAGATAGAAGGGAAACAATTGCAGAAACTTTCCTTAAGAATGTTGACTTTGAGAACAAATTTCATTGTGGCATGAAGTTCAATTCTCCTGAAGAGCTTTCTAATCATGTTGGCGAGTGCAACTTTAGATCTATATTCTGCGAAAACGAGGGATGCAATTCTAGATTTTGTGCAGGTCATATGAAGCAGCATGATTCAACTTGTCCTTTCAAGATAATTCCGTGTGAACAGAGGTGTCCGGATAGCATTATGAGACGTGACATGGACCGGCACTGTATAACTGTTTGTTCCATGAAGCTTGTAAACTGTCCTTTTTACGCAGTGGGTTGTCGGTCTGCTATTGTGCAATGTATGATTGATAAACATTGTTCAGATGATGTTCATTCTCACTTGTGGCACTTGCTTAAAGGCACACACAAGGAAGCAAATGGGGAAGATCTTCAACGACGAGTGGAGGAAATTCTACAGGCCGAATCACATGACCGGTTAGCTCAGGCTCAGGATGTGAGATCTTTAAACTTCCTTGTGAAGGGTATTGAAGCTAAGCTAGGGCCTATTAAGGTGATCGCCATGGAAAAAAATAGCACAAAGAATATTACCAAGAACACTGATGAGGAAGTTGGTGAAACCAATACGAAGGGCAGTGAACAAAGCACACATGCTCCGAATATGGTAAGTTCATCAGATAAAGCTGAAAAGGGTGACATTGTGAATATAGATAGTGCAGAGAATACTGCCCAGACTGACGATAATGAATATAGTCGCATTGAAAGCAAGGGCAGTGAAGAGAGGACACAAACATCAAATATGGTAAATTTATCCGATAAAGCTGAGGATACCTCCAAGAGTGATGTTAGTGAACACAGTCGCATTGAAAACAACGACAGTGAAGAGAAGACACAGATTTCAAATATGGTTTATTTATCTGATAAAGCTGAAATTTATATTGCAAATGATGATGGTGCACAGTTTCACAAGGAAAACCAAGATGCGACAAGTATTGAATTACTTCGGGGCAACAATGAGAGCACCCCGACCAATTTGGAAAAAGTATCAGATAAGGGAGAAATCAGTGCCACAAAAGATATTAAGGTCACTGCAGAGAATAATATTATGAACAAAGATAGTGAAGATGATAACTTAAAAGAGAGCAACCTTCAATAG 1641 0.4046 MSILSSMDLPTIDVDLGGPEKIEEVKERGQCFRCDLCDTEVIHKLAQMFLPGLASACVDSTSGDLFRTPGSVADDLRKEMIDYVTQRSESFVAESIILEGGPDGEVSDHPLDIISNLVDDFVSLKRNFFSRVSGWLLSEKREDKIEDFIQEMEMNGFWTLDRRETIAETFLKNVDFENKFHCGMKFNSPEELSNHVGECNFRSIFCENEGCNSRFCAGHMKQHDSTCPFKIIPCEQRCPDSIMRRDMDRHCITVCSMKLVNCPFYAVGCRSAIVQCMIDKHCSDDVHSHLWHLLKGTHKEANGEDLQRRVEEILQAESHDRLAQAQDVRSLNFLVKGIEAKLGPIKVIAMEKNSTKNITKNTDEEVGETNTKGSEQSTHAPNMVSSSDKAEKGDIVNIDSAENTAQTDDNEYSRIESKGSEERTQTSNMVNLSDKAEDTSKSDVSEHSRIENNDSEEKTQISNMVYLSDKAEIYIANDDGAQFHKENQDATSIELLRGNNESTPTNLEKVSDKGEISATKDIKVTAENNIMNKDSEDDNLKESNLQ 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1302 546 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 366 IPR043211 -
Lal11g1302 546 Pfam TRAF-type zinc finger 223 281 IPR001293 GO:0008270
Lal11g1302 546 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 366 - -
Lal11g1302 546 ProSiteProfiles Zinc finger TRAF-type profile. 223 270 IPR001293 GO:0008270
Lal11g1302 546 MobiDBLite consensus disorder prediction 371 385 - -
Lal11g1302 546 MobiDBLite consensus disorder prediction 358 461 - -
Lal11g1302 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 260 IPR013083 -
Lal11g1302 546 MobiDBLite consensus disorder prediction 436 456 - -
Lal11g1302 546 SUPERFAMILY TRAF domain-like 205 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1302 Lal-Chr11 16681256 16684532 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1302 - - lang:109356552 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1302 11 16681256 16684532 Lal11g1302 11 16681256 16684532 ECH
Lal11g1302 11 16681256 16684532 Lal1g1712 1 19566939 19570661 LSH
Lal11g1302 11 16681256 16684532 Lal20g0224 20 1565870 1569363 LSH