Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1712 ATGTCGATATTATCAAGCATGGATCCGCCCACAATTGAGGTGGACCTCGGCGGTCCCGAGAAGATTGAAGAGGTGAAAGAGGGAGGTCAATTGTTTCATTGTGATCTTTGTGATACAGAAGTAATTCACAAGTTGGCTCAGATGTTCCTTCCGGGACTTGCATCGGCTTGTGTTGACAACACATCGGGTGATCTCTTCAAGACGCCTGGTTCGGTGGTCGATGAATTGAGGAAGGAAATGATAGATTATGTTACCCAGAGAAGTGAATCGTTTGTTGCCGAGTCTGTTATCTTGGAAGGTGATCTGGATGGTGAAGTATCAGATCATCCTTTCGATATCATTTCTAATATGGTTGATGACTTTGTGAGTTTAAAGAGGAATTTCTTTACCCGTGTTTCGGGATGGCTGTTAAGTGAAAAGAGGGAAGACAATATAGAGGATTTCGTTCAAGAGATGGAAATGAATGGTTTTTGGACTCTAGATAGAAGAGAAACAATTGCAGAAACTTTCCTTAAGAATGTTGACTTTGAGAACAAATTTCATTGTGGCATGAAGTTTAATTCCCCTGAAGAGCTTTCCAATCATTTTGACAGCTGCAACTTTAGATCTATATTCTGCGAAAACGAGGGATGCAATGCCCGATTTTGTGCAGGTCATTTGAAGCAACATGATTCAACTTGTCCTTTCAAGATAATTCAGTGCGAACAGAGGTGTCCGGATAGCATTATGAGACGTGACATGGACAGGCATTGTATAACTATTTGTCCGATGAAGCTCGTAAACTGTCCTTTTTACGCAGTGGGTTGTCGGTCTGCTATTGTGCAATGTATGATCGGTAAACATTGTTCAGATGATGTTCATACTCACTTGTTTCACTTGCTTAAAGGCACACACAAGCAAGCAAATGGGGAAGATCTTCAACGACGAGTGGAGGAAGTTCTACAGGCTGAATCAAACGGCCGGTTAGCTCAGGCTCGGGATGTGAGATCTTTAAGCATCATTGTCAAGGGTATTGAAGCTAAGTTAGGGCCTATTAAGGTGAGGACTGTGGAAAAAAATAGCGCGGAGACTATTACCAAGAATGCTGATGCGGAAGTTGCTGACACCGATACGAAGGGCAGTGAACAGAACACAAAGGCTTCGGATATGGTAAGTTCGTTACATAAATCTGACAAGGTTGACAGTGTGAATATAGATAGTGCAGACAATGCTGCCAAGACCGAGGATACCGAACATAGTCACATTGAAAACAATGATAGTGAAGAGAGGACACAAACTGTGGTAAATTTATCGGATAAAGATGAGGATACCGCCAAGAGTGGTGATAGTGACCACAATCACATTGAGAACAAGGACAGTGAAGAGAGGACACAGACTTCAAATACGATTACTTTATCTGATAAAACTGAAATTAATGTTGCAAACGACGATGGCGCACAGATTCACAAGGAGAACCAAGATGGCACAAGTAGTGAATTACTTAAGGGCAACAAAGAGAGCAACCAGGCAAATTTGTTAACAGTATCAGATAAAGAAGAAATCAGTGCCACAAATGAGGACAATGCAGAGACTAACACTGGAAACAAATATATTGAAGGCACCAACTTTGAAAATAAGGAAAAAGACATTCAGAATTCGGAAGTGGATACTAAGGACACGACGGAGAGTAATGTTAGGAACAAAGATACTGAAGATGATAACTTAAAATATAGCATTCAAACTTCAAAAGTGAAAAATGTATCGGATTTAGCTGCACGATAA 1761 0.4094 MSILSSMDPPTIEVDLGGPEKIEEVKEGGQLFHCDLCDTEVIHKLAQMFLPGLASACVDNTSGDLFKTPGSVVDELRKEMIDYVTQRSESFVAESVILEGDLDGEVSDHPFDIISNMVDDFVSLKRNFFTRVSGWLLSEKREDNIEDFVQEMEMNGFWTLDRRETIAETFLKNVDFENKFHCGMKFNSPEELSNHFDSCNFRSIFCENEGCNARFCAGHLKQHDSTCPFKIIQCEQRCPDSIMRRDMDRHCITICPMKLVNCPFYAVGCRSAIVQCMIGKHCSDDVHTHLFHLLKGTHKQANGEDLQRRVEEVLQAESNGRLAQARDVRSLSIIVKGIEAKLGPIKVRTVEKNSAETITKNADAEVADTDTKGSEQNTKASDMVSSLHKSDKVDSVNIDSADNAAKTEDTEHSHIENNDSEERTQTVVNLSDKDEDTAKSGDSDHNHIENKDSEERTQTSNTITLSDKTEINVANDDGAQIHKENQDGTSSELLKGNKESNQANLLTVSDKEEISATNEDNAETNTGNKYIEGTNFENKEKDIQNSEVDTKDTTESNVRNKDTEDDNLKYSIQTSKVKNVSDLAAR 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1712 586 MobiDBLite consensus disorder prediction 534 567 - -
Lal1g1712 586 Pfam TRAF-type zinc finger 223 281 IPR001293 GO:0008270
Lal1g1712 586 MobiDBLite consensus disorder prediction 484 512 - -
Lal1g1712 586 MobiDBLite consensus disorder prediction 519 533 - -
Lal1g1712 586 SUPERFAMILY TRAF domain-like 204 295 - -
Lal1g1712 586 ProSiteProfiles Zinc finger TRAF-type profile. 223 270 IPR001293 GO:0008270
Lal1g1712 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 260 IPR013083 -
Lal1g1712 586 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 558 IPR043211 -
Lal1g1712 586 MobiDBLite consensus disorder prediction 404 456 - -
Lal1g1712 586 MobiDBLite consensus disorder prediction 366 567 - -
Lal1g1712 586 MobiDBLite consensus disorder prediction 457 473 - -
Lal1g1712 586 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1712 Lal-Chr1 19566939 19570661 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1712 - - lang:109356552 1051.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1302 11 16681256 16684532 Lal1g1712 1 19566939 19570661 LSH
Lal1g1712 1 19566939 19570661 Lal20g0224 20 1565870 1569363 LSH