Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0204 ATGGATTACCTCAACAACAACGACGACGATGATTTCGATTCCTCTTCTTCATACACAGTCCGGTCCAACCGTCGCTTACATCAAGACGATGAACCAGATTTCGGTCTGGACCGGGTTTGCTTACTCCCTTACAGGTGGTGGATTGAGGCGCAATGTGAAGGTGATCGCGTTGAAGGTGTTTTGTATACGGTGTCGTGTAATTCTGATTCTGAGTTTGAGATTTTGATGCATTTGAAGAAGGAGGAGGATCGTGAGAAGATTAAACGGTTAGATTTAGGGTTTTCAGAGCGTCGATATGCGTTGGTTCCCGAAGGGACATGGTTGCGGGCGCTTAAGCGGTATAATGATTTTAATAATGCAATGAAAGATTTTAGGAGCCTCATCCACTCAGAGTCAGAGGACTGTTTGCTTGATTTGTTCCCTTTGCATCTTAGAATATTTGTTTCTTGGGAAACAAATTCACTGGTTGCGAAGATAAGCCAAAAGGAAAACATGGCTGAGTTTTACAAGAAAGCTTGTTCCATTTTCGATTCTGAGTATAATCTGGTGCATATTTGGGACTTTTCAGGGCAGACAACCCAGTTGTTCATGAATGGCAAAGTTAGGTTACCAGACGACTCCACCCTTCAACCTGGAAAAGAGGTTCTTCTGGAGTTGCTAGTTCATGGACTTTCAGATTCTATGAGAGATAATGGGTGCAGTGAGAAGATTGCAGATAGGTCTGAGATGGAATGTTCTTCTCACAGTGGCTCTGTCATGATGAATGGATGTACTGGAAGTGTGATCTGCAATATAAAACAAACCAACTCCTTTCAAGGCAATAGCTATAGAGCAATTCGGTCTTTGGGCTTGACAGGATTGCATAATCTTGGAAATACATGTTTTATGAGTAGTGCCATTCAATGTTTGGCTCACACCACAAAGCTTGTTGATTTTTTCCTTGGGGATTACCGTAAAGAGATAAATTATGAAAATCCCTTGGGAATGAATGGAGAACTTGCTTTAGCTTTTGGTGATTTACTTAGAAGGCTTTGGGTTCCTGGAGCAAGGCCTGTGTCACCAAGAACGTTCAAGAGTAAACTGGCTAATTTTGCTCCTCAGTTTTGTGGTTATAGCCAGCATGACTCTCAAGAACTTTTAGCTTTTTTGTTGGACGGACTGCATGAAGACCTTAATCGTGTAAAACGCAAGCCATACCATGAAGTTAAGGATGCCGATGGCCGCCCAGATGATGAATTGGCAGAAGAGTACTGGCGAAATCATCTTGCTCGCAATGATTCCATTGTAGTTGATTTATGCCAAGTGAGTCTTGGTCAATTTCGGTCGACATTGGTTTGCCCTATGTGCAAGAAGGTTTCTATCACGTTTGATCCTTTTATGTACCTTTCTCTGCCTTTACCTTCAACAATGATGCGGACCATGACTTTGACTGTTATGAGCACTGATGGGATTACCATGCCTTCTATAATTACCATAACCGTCCCTGAGCGTGGTACACTAAGGGATCTAATTGGGGCCTTAAGTGCTTCTTGTTCTCTAGGGGATGATGAAACCCTGTTGGTGGCTGAGATATATAAGAATCGAATTTTTCGATTTTTGGAGGAACCATCTGAATCATTAGTTGATATTAGAGATCAAGACAAACTTGCCGCTTACAGATTGCAGAAAGATAATGAAGCTAGTTCATTGGTTGTTTTCGTGCATGAACTTGCTGAAAAGTACTACTTTTCTGGGAAGGAGGGGTTTGATTACAGACCATTTGGCATTCCTGTTATGGCAAGGTTGTCAAGTATTTCTGGTGGCGATGATGTTCGTAGGGAGTTTCTGAAGCTAATCTGTCCTTTTATGATGTCCAATGAAGATATATTAGATGATTGTGATAAAGAAGAAGATGCCAGTAAAAAACTTACTGAAGATAATGAATTGGGTGAAACTACTAGCTCTGCAGCAGTAATAAGTGATGAAGACTCGAACAGTGAAACAGATGACTTTGAATTCTACTTACCATTAGGAATTGGGAATGTGAAGATAAAATTGAATGAACCATTACCATTTACTGAGTTACCTGGGATGCTGCAAGTGTTTGTCTTATGGTCAGATAAGATGCTTAAAAAATATGATAAATACCATCTCAACTTATTGCCTGAGGTTTTAACGCCCCAGTTACTCACCAAGAGAACACAAGAATCACTATCTTTTTACAAGTGCCTTGAAGCTTTTTTGAAAGAGGAACCTCTTGGCCCAGAAGACATGTGGTACTGTCCTACCTGCAAAAATCCACAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCTGAAATCCTTGTTGTTCATTTGAAGAGGTTCTCATACAGTCGATTCTTCAAGAACAAGCTGGAAACATTCGTTGACTTTCCAATTAATGATCTGAACTTGTCAAGCTACATTGCCTACAGAAACAATCAGTCTTTGAACCGCTACATGCTGTATGCAATAAGTTGTCACTATGGAGGGTTAGGAGGAGGTCACTATACATCATTTGTCCGTTATGGGCATGATACATGGTACGAGTTTGATGATAGCAGGGTTGTCCCTGTCAGTGAGGAGACAATAAAGACTTCTGCTGCTTATGTTCTTTTCTACAAGAAAGTGTAG 2637 0.4088 MDYLNNNDDDDFDSSSSYTVRSNRRLHQDDEPDFGLDRVCLLPYRWWIEAQCEGDRVEGVLYTVSCNSDSEFEILMHLKKEEDREKIKRLDLGFSERRYALVPEGTWLRALKRYNDFNNAMKDFRSLIHSESEDCLLDLFPLHLRIFVSWETNSLVAKISQKENMAEFYKKACSIFDSEYNLVHIWDFSGQTTQLFMNGKVRLPDDSTLQPGKEVLLELLVHGLSDSMRDNGCSEKIADRSEMECSSHSGSVMMNGCTGSVICNIKQTNSFQGNSYRAIRSLGLTGLHNLGNTCFMSSAIQCLAHTTKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRRLWVPGARPVSPRTFKSKLANFAPQFCGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDDELAEEYWRNHLARNDSIVVDLCQVSLGQFRSTLVCPMCKKVSITFDPFMYLSLPLPSTMMRTMTLTVMSTDGITMPSIITITVPERGTLRDLIGALSASCSLGDDETLLVAEIYKNRIFRFLEEPSESLVDIRDQDKLAAYRLQKDNEASSLVVFVHELAEKYYFSGKEGFDYRPFGIPVMARLSSISGGDDVRREFLKLICPFMMSNEDILDDCDKEEDASKKLTEDNELGETTSSAAVISDEDSNSETDDFEFYLPLGIGNVKIKLNEPLPFTELPGMLQVFVLWSDKMLKKYDKYHLNLLPEVLTPQLLTKRTQESLSFYKCLEAFLKEEPLGPEDMWYCPTCKNPQQATKKLDLWRLPEILVVHLKRFSYSRFFKNKLETFVDFPINDLNLSSYIAYRNNQSLNRYMLYAISCHYGGLGGGHYTSFVRYGHDTWYEFDDSRVVPVSEETIKTSAAYVLFYKKV 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0204 878 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 285 878 IPR028889 -
Lal20g0204 878 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 821 838 IPR018200 GO:0004843|GO:0006511
Lal20g0204 878 Gene3D Cysteine proteinases 271 516 - -
Lal20g0204 878 CDD Peptidase_C19R 732 876 - -
Lal20g0204 878 Pfam Ubiquitin carboxyl-terminal hydrolase 285 875 IPR001394 GO:0004843|GO:0016579
Lal20g0204 878 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11 878 - -
Lal20g0204 878 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11 878 - -
Lal20g0204 878 Gene3D Cysteine proteinases 619 878 - -
Lal20g0204 878 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 286 301 IPR018200 GO:0004843|GO:0006511
Lal20g0204 878 SUPERFAMILY Cysteine proteinases 283 877 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0204 Lal-Chr20 1442430 1449809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0204 722 878 Miscellaneous Gene Families AT4G31670 31.250 1.77e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0204 - K21343 cam:101507058 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1285 11 16516010 16524353 Lal20g0204 20 1442430 1449809 LSH
Lal1g1726 1 19686846 19694662 Lal20g0204 20 1442430 1449809 LSH