Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1726 ATGACCCGTTTATATTCCTCTCTCACTCGCTTTTTCTCTCTTCTTTCTCTCTCTACCCTCCGTCTCTTCAACTCCCTCTCTCGCTTCTTCAGACCCTTCCTCTCAATGGATTCTTCTCCCTATACGCTCCGGTTCAATGACCCCGATTTCGGCCTGGACCGGGTTTATTTACTACCTTACAGATGGTGGAGTGAGTTACAATGTGAAGGTGATCGTGTAGAAGGTGTTGTGTACACTGTGTTGTGTAATTCGGATTCTGAGTTTGAGATTTTGCTGCATTTGAAGAAGGAAGAGGATTGTGAGAAGATTAAGCGGTTGGAATTAGGGTTTTCAGGGCGTCAATATGCGTTGGTTTCTGAAGGGACTTGGTTGCGCGCGCTTAAGCGGTATAATGATTTTAATAATGCAATGAAGGATTTTGGGAGCCTCTTGCACTCAGAGTCAGAAGGTTGTTTGCCTGATTTGTTCCCGTTGCAACTTGGGATTTTTGTTTCTTGGGAAACAAATTCACTGGTTGCAAAGATAAGCCAAAAGGAAAATGGAGCTGAGTTTTACAAGAAAGCTTGTTACATTTTCATTTCTGAGTATAATCAGGTGCATATTTGGGACTTTTCGGGGCAGACAACCCAGTTGTTTATGAATGATAAAGCTAAGTTACCAGACAATTCTACCATTCAACCTGAAAAAGAGGTTCTTCTAGAGTTGCAAGTTCATGGACTTTCAGATTCTGTGAGGGATAATGGGTGCAGTGAGATGATAGCAGATAGGTCTCAGATGGAAACTTCTTCTCACAGTGGCTCTGTCACGATGAATGGATGCACTGAAAGTGTGATCTGCAATGTAAAACAAACGAACTCCTTTCAAGGCAATATCTGCAAAGCAATTCGATCTTTGGGCTTGACAGGATTGCAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTCTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGAATACAGTAAAGAGATAAATTATGAAAATCCTTTGGGGATGAATGGTGAACTTGCTTTAGCTTTTGGTGATTTACTTAGAAGGCTCTGGGTTCCTGGAGCAAATCCTGTGTCACCAAGAACATTCAAGATGAAATTGGCTAACTTTGCTCCTCGGTTTAGTGGTTATAGCCAGCAGGACACTCAAGAACTTCTAGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAACCGCGTAAAACGCAAGCCATACCATGAAGTTAAGGATGCAGATGGCCGTCCAGATGATGAAGTGGCAGAAGAGTATTGGCGAAATTATCTTGCTCGCAATGATTCCATCGTGGTTGATTTATTCCAAGGTCAATTTCGGTCGACATTGGTTTGCCCTATGTGCAAGAAGGTTTCTGTCACGTTTGACCCTTTTATGTATTTATCTCTGCCTTTACCTTCTACAACAATGCGAACCATGACTTTGACTGTTATGAGAACTGATGGGATTACCATGCCTTCTGTATTTACCATAACCGTGCCTGAGCGTGGTACTGTCAAGGATCTAATTGGGGCCTTAAGTGCTTCTTGTTCTCTAGGAGATGATGAAACATTATTGGTGGCTGAGATATACAAGAATCGGGTATTTCGATTTTTTGAGGAGCCATCTGATTCATTAGCTGATATTAAAGATCTAGAGAAACTTGCCGCTTACCGATTACAGAAAAATAGTGAAGCTAGTCCCTTGGTTGTTTTTGTGCATGAACTGGCTGAAAAGTACTATTTTTCTGGGAAGGAGAGGTTTGATTATAGATCATTTGGTATTCCAGTTATGGCAAGGTTGTCAAATATTTCTGACGGAGATGATGTTCGTAGGGAGTTTCTGAAGCTTATCGATCCATTTATGATGTCCAATGAAGATATATTAGATGAGTGTGATAAGGAAGAAGATGCCAATAAAAAACATAGTGAAGATGATGAAATGGGTGAGGCTACTAGTTCTGCAGCAGTAGGAAGTGATGAAGAGTCAAACAGTGGAACAGAAGATGACTTTGAATTCTACTTACCTGGTATGCAAGGAATTGGGAACGCGAAGATAAAATTGAATGAACCATTACCGTTCACGGTGTTACCTGGGAAGCTGGAGGTACTTGTCTTATGGTCAGATAAGATGCTTAAAAAGTATGATACATACCATCTCAACATGTTGCCTGAGGTTTTCAAGCCCCAGCAATTCACCAAAAGAACACAAGAATCAATATCTATTTACAAGTGTCTTGAAGCCTTTTTGAAAGAGGAACCCCTTGGGCCAGAAGACATGTGGCACTGTCCTACTTGCAAAGAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCTGAAATCCTCGTTGTTCATTTGAAGAGGTTCTCATATAGTCGATTCTTCAAGAACAAGCTGCAAACGTTAGTTGATTTTCCAACAAATGATCTGGACTTCTCAAGCTACATTGCCCACGGGAATAACCAGTCTTCAAATGGCTACATGTTGTATGCAATTAGTTGTCACTATGGAGGATTAGGAGGAGGTCACTATACAGCATTTGTCCGTTATGACCATGATACATGGTATGAGTTTGATGATAGCAGGGTTGTCCCTGTCAGTGAGGAAATGATACAGACTTCTGCTGCTTATGTTCTTTTCTACAAGAAAGTTTAG 2685 0.4104 MTRLYSSLTRFFSLLSLSTLRLFNSLSRFFRPFLSMDSSPYTLRFNDPDFGLDRVYLLPYRWWSELQCEGDRVEGVVYTVLCNSDSEFEILLHLKKEEDCEKIKRLELGFSGRQYALVSEGTWLRALKRYNDFNNAMKDFGSLLHSESEGCLPDLFPLQLGIFVSWETNSLVAKISQKENGAEFYKKACYIFISEYNQVHIWDFSGQTTQLFMNDKAKLPDNSTIQPEKEVLLELQVHGLSDSVRDNGCSEMIADRSQMETSSHSGSVTMNGCTESVICNVKQTNSFQGNICKAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGEYSKEINYENPLGMNGELALAFGDLLRRLWVPGANPVSPRTFKMKLANFAPRFSGYSQQDTQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDDEVAEEYWRNYLARNDSIVVDLFQGQFRSTLVCPMCKKVSVTFDPFMYLSLPLPSTTMRTMTLTVMRTDGITMPSVFTITVPERGTVKDLIGALSASCSLGDDETLLVAEIYKNRVFRFFEEPSDSLADIKDLEKLAAYRLQKNSEASPLVVFVHELAEKYYFSGKERFDYRSFGIPVMARLSNISDGDDVRREFLKLIDPFMMSNEDILDECDKEEDANKKHSEDDEMGEATSSAAVGSDEESNSGTEDDFEFYLPGMQGIGNAKIKLNEPLPFTVLPGKLEVLVLWSDKMLKKYDTYHLNMLPEVFKPQQFTKRTQESISIYKCLEAFLKEEPLGPEDMWHCPTCKEPQQATKKLDLWRLPEILVVHLKRFSYSRFFKNKLQTLVDFPTNDLDFSSYIAHGNNQSSNGYMLYAISCHYGGLGGGHYTAFVRYDHDTWYEFDDSRVVPVSEEMIQTSAAYVLFYKKV 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1726 894 Coils Coil 632 652 - -
Lal1g1726 894 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 302 317 IPR018200 GO:0004843|GO:0006511
Lal1g1726 894 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 837 854 IPR018200 GO:0004843|GO:0006511
Lal1g1726 894 CDD Peptidase_C19R 747 892 - -
Lal1g1726 894 Gene3D Cysteine proteinases 630 894 - -
Lal1g1726 894 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 32 894 - -
Lal1g1726 894 MobiDBLite consensus disorder prediction 642 656 - -
Lal1g1726 894 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 32 894 - -
Lal1g1726 894 Pfam Ubiquitin carboxyl-terminal hydrolase 301 891 IPR001394 GO:0004843|GO:0016579
Lal1g1726 894 MobiDBLite consensus disorder prediction 642 676 - -
Lal1g1726 894 Gene3D Cysteine proteinases 290 510 - -
Lal1g1726 894 SUPERFAMILY Cysteine proteinases 299 893 IPR038765 -
Lal1g1726 894 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 301 894 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1726 Lal-Chr1 19686846 19694662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1726 748 894 Miscellaneous Gene Families AT4G31670 33.333 2.30e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1726 - K21343 gmx:100791802 1247.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1726 1 19686846 19694662 Lal1g1726 1 19686846 19694662 ECH
Lal11g1285 11 16516010 16524353 Lal1g1726 1 19686846 19694662 LSH
Lal1g1726 1 19686846 19694662 Lal20g0204 20 1442430 1449809 LSH