Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1285 ATGACCCGTTTTCTCGAGAAGCTCCGTTTATCTTCCACCGTGACCCGTTTTCTCTCTCTTCTTTTTCTCCCTACTCTTCGTCTCTTTAAGTCCCTTTCACGCTTTTTACTCTTTCAATCCCTTCAACCTTTTCTCTCTATGGATAATCTCTTCGCCGATAACGATTACTTCAACGACGGCGACGGCGACTTCGATTCCTCCTATAGCCTCCGCTCCAATCGCCGATTTCTCCAAGATGATGACCCTGATTTCGGACTCGACCGGGTTTACTTAATCCCTTTCAGGTGGTGGATTGAGGCGCAATGTGAAGGTGATCGTGTGGAAGGTGTTTCGTACACGGTGTCGTGTTATTCTGATTCCGAGGATGAAATTTTGCTGCATTTGAGGAAGGAGAAGGACGAGGATCGTGAGAAGATTAAACGGTTGGAGTTAGGGTTTTCAGGGCGTCAATATGCTTTGGTTCCTGAAGGGAGTTGGTTGCGTGCGCTTAAGCGGTATAATGATTTTAATAATGCAATGAAAAATATTGGGAGCCTCTTCCACTCAGAGCCAGAGGACTGTTTGCCTGATTTGTACCCCTTGCAACTAAGGATATTTGTTTGTTGGGAAACAAGTTCACTGGTTGCAAAGATAAGCCAAAAGGAAAATGGGGCTGAGTTTTACAAGAAAGCTTCTTACATTTTCAATTCTGAGGGTAATCCGGTGCATATTTGGGACTTTTCAGGGCAGACAACCCAGTTGTTCATTAATGACAAAGTTAGGTTACCCAGTGAGTCTGCCGTTCAATCTGGAAAAGAGGTTATTCTAGAGTTGCACGTTCATGGACTTTCAGATTCTATGAGGGATGATGGGTTCAGTGAGATGATTGCAGATAGGTCTCAGTTGGAATGTTCTTCTCACAGTGGCTCTGCCATGATAAATGGATGCACTGAAAGTGTGACCCGCAATGTAAAAGCAACCAACTCCTTTCGAGCCAATAGTTATAAAGCAATTCAATCTTTGGGCTTGACAGGATTGCAGAATCTTGGAAACACTTGTTTTATGAATAGTGCCATTCAGTGTCTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTATCGTAAAGAGATTAATTTTGAAAATCCCTTGGGAATGAATGGTGAGCTTGCTTTAGCTTTTGGTGATTTACTTAGAAGGCTCTGGGTTCCCGGAGCAAGGCCTGTGTCACCAAGAACGTTTAAGATGAAACTATCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAACATGACTCTCAAGAACTTCTAGCTTTTTTATTGGACGGACTGCATGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGCCGTCCAGATGATGAAGTGGCAGAAGAGTACTGGCGAAATCATCTTGCTCGCAATGATTCTATCGTAGTTGATTTATGCCAAGGCCAATTTCGGTCGACATTGGTTTGCCCTATGTGCAAGAAGGTTTCTATCACGTTTGACCCTTTTATGTATCTATCTCTACCTTTACCTTCTACAACGATGCGGACCATGACTTTGACTGTTATGAGCACTGATGGGATTACCATGCCTTCTACAATTACCATAACTGTGCCTGAGCGTGGTACACTCAAGGATCTTGTTGGGGCCTTAAGTACTTCTTGTTCTCTTGGAGATGATGAAACCCTATTGGTGGTTGAGGTATACAAGAATCGGATATTTCGATTTTTTGAGGAACCATCTGAATCATTGACTGAGATTAGAGATCTAGACAAACTTGCTGCTTACCGATTAAAGAAAAATAATGAAGCTGGTCCCTTGGTTGTTTTCGTACATGAACTGGCTGAGAAGTACTATTCTGCTGGGAGAGAGAGATTTGAATATAGATCGTTTGGTGTTCCAGTTATCGCCAGGTTGTCTAGTATTTCTGATGAAAATGATGTTCGTAGGGAGTTTCTGAAGCTAATTAAACCGTTCATCTTGTCAAATGAAGATATATTAGAGGAGTGCGATAAGGATGATGATACCAATAAAAAACATAGTGAAGATGATGAATTGGGCGACACTACTAGCTCTGCAGCAGTAGGAAGTGATGCAGACTCAAACAATGGAACAGAGGATGACTTTGAATTCTTCTTATCTGGTGCGCAGGGATTTGGGAATTTGAAGATAAAATTGAACGAACCACTACCATTTACAGAGTTACCCGAGAAGCTGGAGGTGCATGTCGTATGGCCAGATAAGATGCTTAAGAAGTGCGATACGTACCACCTCAACTTATTGCCTGAGGTTTTCAAGCCCCAGCTATTCACCAAGAGAACGCAAGAATCAATTTCTATTTACAAGTGCCTTGAATCCTTTTTGAAAGAGGAACCTCTTGGACTAGAAGACATGCACTGTCCTGCCTGCAAAAAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCTGAAATCCTTGTTGTTCATTTGAAGAGGTTCTCATACAGCCGATTCTTCAAGAACAAGCTGGAAACCTTCGTTGACTTTCCAATTGATGATCTGGACTTCTCAAGCTACATTGCCCAGAGGAACAATCAGTCTTCCAACCATTACATGTTGTATGCAATTAGTTGTCACTATGGGGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGTTATGGGCATGATACATGGTATGAGTTTGATGATTGCAGGGTTGTCCCTGCCAATGAGGAAATGATTAAAACTTCTGCTGCTTATGTTCTTTTTTACAAGAAAGTGTAG 2790 0.4219 MTRFLEKLRLSSTVTRFLSLLFLPTLRLFKSLSRFLLFQSLQPFLSMDNLFADNDYFNDGDGDFDSSYSLRSNRRFLQDDDPDFGLDRVYLIPFRWWIEAQCEGDRVEGVSYTVSCYSDSEDEILLHLRKEKDEDREKIKRLELGFSGRQYALVPEGSWLRALKRYNDFNNAMKNIGSLFHSEPEDCLPDLYPLQLRIFVCWETSSLVAKISQKENGAEFYKKASYIFNSEGNPVHIWDFSGQTTQLFINDKVRLPSESAVQSGKEVILELHVHGLSDSMRDDGFSEMIADRSQLECSSHSGSAMINGCTESVTRNVKATNSFRANSYKAIQSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINFENPLGMNGELALAFGDLLRRLWVPGARPVSPRTFKMKLSNFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDDEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPMCKKVSITFDPFMYLSLPLPSTTMRTMTLTVMSTDGITMPSTITITVPERGTLKDLVGALSTSCSLGDDETLLVVEVYKNRIFRFFEEPSESLTEIRDLDKLAAYRLKKNNEAGPLVVFVHELAEKYYSAGRERFEYRSFGVPVIARLSSISDENDVRREFLKLIKPFILSNEDILEECDKDDDTNKKHSEDDELGDTTSSAAVGSDADSNNGTEDDFEFFLSGAQGFGNLKIKLNEPLPFTELPEKLEVHVVWPDKMLKKCDTYHLNLLPEVFKPQLFTKRTQESISIYKCLESFLKEEPLGLEDMHCPACKKPQQATKKLDLWRLPEILVVHLKRFSYSRFFKNKLETFVDFPIDDLDFSSYIAQRNNQSSNHYMLYAISCHYGGLGGGHYTAFVRYGHDTWYEFDDCRVVPANEEMIKTSAAYVLFYKKV 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1285 929 MobiDBLite consensus disorder prediction 677 692 - -
Lal11g1285 929 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 337 929 IPR028889 -
Lal11g1285 929 MobiDBLite consensus disorder prediction 693 707 - -
Lal11g1285 929 MobiDBLite consensus disorder prediction 676 707 - -
Lal11g1285 929 Gene3D Cysteine proteinases 742 929 - -
Lal11g1285 929 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 54 929 - -
Lal11g1285 929 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 54 929 - -
Lal11g1285 929 SUPERFAMILY Cysteine proteinases 335 928 IPR038765 -
Lal11g1285 929 Pfam Ubiquitin carboxyl-terminal hydrolase 337 926 IPR001394 GO:0004843|GO:0016579
Lal11g1285 929 CDD Peptidase_C19R 783 927 - -
Lal11g1285 929 Gene3D Cysteine proteinases 321 548 - -
Lal11g1285 929 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 338 353 IPR018200 GO:0004843|GO:0006511
Lal11g1285 929 Coils Coil 125 145 - -
Lal11g1285 929 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 872 889 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1285 Lal-Chr11 16516010 16524353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1285 784 929 Miscellaneous Gene Families AT4G31670 31.333 1.77e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1285 - K21343 cam:101507058 1281.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1285 11 16516010 16524353 Lal1g1726 1 19686846 19694662 LSH
Lal11g1285 11 16516010 16524353 Lal20g0204 20 1442430 1449809 LSH