Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0174 ATGAGCAGGTCAGGTCAGCCTCCAGATTTGAAGAAGTACATGGACAAGAAGCTTCAGATCAAGCTGAATGCAAATCGGATGATCGTGGGTACTCTCCGGGGCTTTGACCAGTTTATGAATTTAGTTGTTGACAACACTGTGGAAGTGAATGGCAATGACAAAACTGACATAGGCATGGTGGTAATCAGAGGAAATAGTGTGGTCACGGTTGAGGCACTTGAACCGGTGAACAGGACATGA 240 0.4583 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVTVEALEPVNRT 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0174 79 PIRSF Lsm7 5 78 - -
Lal20g0174 79 SMART Sm3 8 72 IPR001163 -
Lal20g0174 79 SUPERFAMILY Sm-like ribonucleoproteins 9 76 IPR010920 -
Lal20g0174 79 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN G 1 79 - -
Lal20g0174 79 Pfam LSM domain 9 71 IPR001163 -
Lal20g0174 79 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN 1 79 IPR044641 -
Lal20g0174 79 CDD Sm_G 6 74 IPR034098 GO:0000387|GO:0005681
Lal20g0174 79 Gene3D - 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0174 Lal-Chr20 1202661 1204483 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0174 K11099 - gmx:100305530 154.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0174 20 1202661 1204483 Lal20g0174 20 1202661 1204483 ECH
Lal11g1245 11 16175694 16178238 Lal20g0174 20 1202661 1204483 LSH
Lal1g1754 1 19910074 19911590 Lal20g0174 20 1202661 1204483 LSH