Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal1g1754 | ATGAGTAGATCAGGACAACCTCCGGATTTGAAGAAGTATATGGACAAGAAGCTTCAAATCAAGCTGAATGCAAATCGGATGATTGTGGGTACTCTCCGGGGCTTTGACCAGTTTATGAATTTAGTTGTTGACAACACCGTGGAAGTGAATGGCACTGAGAAAACTGATATAGGCATGGTGGTAATCAGAGGAAATAGTGTGGTCACTGTTGAAGCACTTGAACCGGTGAACAGGGCATAA | 240 | 0.4333 | MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGTEKTDIGMVVIRGNSVVTVEALEPVNRA | 79 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal1g1754 | 79 | PANTHER | SMALL NUCLEAR RIBONUCLEOPROTEIN | 1 | 79 | IPR044641 | - | |
| Lal1g1754 | 79 | CDD | Sm_G | 6 | 74 | IPR034098 | GO:0000387|GO:0005681 | |
| Lal1g1754 | 79 | SUPERFAMILY | Sm-like ribonucleoproteins | 8 | 75 | IPR010920 | - | |
| Lal1g1754 | 79 | PANTHER | SMALL NUCLEAR RIBONUCLEOPROTEIN G | 1 | 79 | - | - | |
| Lal1g1754 | 79 | Pfam | LSM domain | 9 | 71 | IPR001163 | - | |
| Lal1g1754 | 79 | Gene3D | - | 1 | 76 | - | - | |
| Lal1g1754 | 79 | SMART | Sm3 | 8 | 72 | IPR001163 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal1g1754 | Lal-Chr1 | 19910074 | 19911590 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal1g1754 | K11099 | - | sind:105174044 | 154.836 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal1g1754 | 1 | 19910074 | 19911590 | Lal1g1754 | 1 | 19910074 | 19911590 | ECH | |
| Lal11g1245 | 11 | 16175694 | 16178238 | Lal1g1754 | 1 | 19910074 | 19911590 | LSH | |
| Lal1g1754 | 1 | 19910074 | 19911590 | Lal20g0174 | 20 | 1202661 | 1204483 | LSH |