Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0107 ATGGGAAGAGATAAAAAAGGGGAACCAAAGAATGAGACTGAGAAGAAACACGACGGAGGAGGAGAAAAGAAAAACGACGCACCTGCCTCTGTCGTTTTGAAGTTAGACTTACACTGCGAGGGATGTGTAAAGAAAATCAAGAAAGCCGTTTATCACTTCGATGGTGTGGAAGACGTTAAGGCTGATATTTCCGCTAATAAATTAACCGTTATCGGAAAACTTGACCCCGCTAACTTACGAGATAAACTGGCCGAGAAAACAAAGAAGAGCGTCGATCTTGTTTCGTCTCATGCTAAGAAAGACGCCGCTGGCGATAAACCGCCGGTGAAGAAGTTGGAAGAGGAGATAACTGACGAGAAAAAGACGGAAGAGAGAAAACCAAAAAAGAGTACGGTGGTTTTGAAGACCAAGCTTCACTGTGACGGTTGCATCCAAAAAATTCGGAAGATTATCCTCAAGTTCAAAGGAGCTGAATCAGTTGAGATTGATGGAGGGAAGGAATTAATAACGGTTGAAGGAACAATGGATGTTAAAGAAATGGTATCATACCTAAAAGGGAAATTGAAGGGTAATGCTGAGGTTGTGGCACCTAAAAAAGAGAAGGAGAAAGAGAAAGAAGAAGGAGAAAGTGAGAAGAAGGAAAGTAGAGGGAAAAAAGAGGAAGGTGCAGTTAAGGTAGAAGTGAACAAAATGGAACATCATTACCCACATGCTCCTATGTATAATGGTAATTATGAGATGGATCAACAACAAGAACATTATTATGGTTATATGCATCCTCCCCCTCCACAAATGTTCAGTGACGAGAATCCTAATGCTTGTTCCATGATGTGA 834 0.4125 MGRDKKGEPKNETEKKHDGGGEKKNDAPASVVLKLDLHCEGCVKKIKKAVYHFDGVEDVKADISANKLTVIGKLDPANLRDKLAEKTKKSVDLVSSHAKKDAAGDKPPVKKLEEEITDEKKTEERKPKKSTVVLKTKLHCDGCIQKIRKIILKFKGAESVEIDGGKELITVEGTMDVKEMVSYLKGKLKGNAEVVAPKKEKEKEKEEGESEKKESRGKKEEGAVKVEVNKMEHHYPHAPMYNGNYEMDQQQEHYYGYMHPPPPQMFSDENPNACSMM 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0107 277 Coils Coil 198 218 - -
Lal20g0107 277 Gene3D - 27 101 - -
Lal20g0107 277 MobiDBLite consensus disorder prediction 1 28 - -
Lal20g0107 277 MobiDBLite consensus disorder prediction 196 223 - -
Lal20g0107 277 Pfam Heavy-metal-associated domain 36 89 IPR006121 GO:0046872
Lal20g0107 277 Pfam Heavy-metal-associated domain 137 178 IPR006121 GO:0046872
Lal20g0107 277 Gene3D - 125 203 - -
Lal20g0107 277 MobiDBLite consensus disorder prediction 1 24 - -
Lal20g0107 277 MobiDBLite consensus disorder prediction 94 127 - -
Lal20g0107 277 CDD HMA 138 173 IPR006121 GO:0046872
Lal20g0107 277 CDD HMA 37 89 IPR006121 GO:0046872
Lal20g0107 277 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 1 241 IPR044594 GO:0046872
Lal20g0107 277 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 250 277 IPR044594 GO:0046872
Lal20g0107 277 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 1 241 - -
Lal20g0107 277 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 250 277 - -
Lal20g0107 277 ProSiteProfiles Heavy-metal-associated domain profile. 37 70 IPR006121 GO:0046872
Lal20g0107 277 SUPERFAMILY HMA, heavy metal-associated domain 31 86 IPR036163 GO:0046872
Lal20g0107 277 SUPERFAMILY HMA, heavy metal-associated domain 130 185 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0107 Lal-Chr20 695510 697515 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0107 - - gmx:100795652 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0107 20 695510 697515 Lal20g0107 20 695510 697515 ECH
Lal11g1168 11 15422944 15424994 Lal20g0107 20 695510 697515 LSH
Lal1g1805 1 20394126 20396699 Lal20g0107 20 695510 697515 LSH