LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal11g1168	ATGGGAGAGAAAAAAGAGCAACAGAAGAATGAAACCGAGAAGAAACCCGATGGAGGAGATAAGAAAAACGACGCTTCTACCTCTGTCGTTTTGAAGCTTGAATTGCATTGCGGAGGATGTGTCAAGAAAATCAAAAAAACCGTTCGCCATTTCGACGGCGTTGAGGACGTTAAGGCTGATATTTCCGCTAATAAACTAACCGTTATTGGAAAAGTGGATCCCGCTCAGTTACGAGATAATCTGGTGGCGAAAACGAAGAAGAAGGTTGATCTCGTTTCGCCTCAGCCGAAGAAAGATGCTGGCACCGGTGGCGAGAAACCGCCGGAGAAGAAGACGGAAAAGGAGAAGATCGTAGAGAAAGAGACGGAAGAGAAAAAACAAAAACAGAGAACGGTGGTTTTGAAGACCAGATTACACTGTGACGGTTGCATTCAAAAAATTCGGAAGATTATCCTCAACTTCAAAGGAGCTGAATCGTTGAACATTGATGGAGGCAAGGATTTGATAACGGTTCAAGGAACAATGAACGTTAAAGATTTGTTACAATATCTGAGTGAGAAGCTGAAACGTAAAGTTGAGGTGATCCCACTTAAGGAAAAAAAAGACCAAGACACAGAAGATGAAAAGAAAGTGAAAAAGAACAAAGACAATATTAAAAAAAGTGGGAAAAAAGAGGAAAGTGCAGTTAAGGTAGAGGTTAACAAAATGGAACACCATGGATATGGATATCCATCAGCTCCTATTTACACGTACCCGTACGGATATGGTGAAAGTAGTGCTAGTACTGGTTATGCAATGGAGGTTCAGCCATCAGGGTATAATGGTAATTATCACGTGGATCAAGGATACAATCAACAACGTTATGGTTATGTTGAACAACCACCATTGTATATGAATACTCAAAATTATCCTCCTTCACAGATGTTCAGTGATGAGAATCCTAATGCTTGTTCAATGATGTGA	963	0.406	MGEKKEQQKNETEKKPDGGDKKNDASTSVVLKLELHCGGCVKKIKKTVRHFDGVEDVKADISANKLTVIGKVDPAQLRDNLVAKTKKKVDLVSPQPKKDAGTGGEKPPEKKTEKEKIVEKETEEKKQKQRTVVLKTRLHCDGCIQKIRKIILNFKGAESLNIDGGKDLITVQGTMNVKDLLQYLSEKLKRKVEVIPLKEKKDQDTEDEKKVKKNKDNIKKSGKKEESAVKVEVNKMEHHGYGYPSAPIYTYPYGYGESSASTGYAMEVQPSGYNGNYHVDQGYNQQRYGYVEQPPLYMNTQNYPPSQMFSDENPNACSMM	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal11g1168	320	ProSiteProfiles	Heavy-metal-associated domain profile.	35	81	IPR006121	GO:0046872
	Lal11g1168	320	Gene3D	-	24	99	-	-
	Lal11g1168	320	Gene3D	-	126	203	-	-
	Lal11g1168	320	SUPERFAMILY	HMA, heavy metal-associated domain	129	192	IPR036163	GO:0046872
	Lal11g1168	320	SUPERFAMILY	HMA, heavy metal-associated domain	28	81	IPR036163	GO:0046872
	Lal11g1168	320	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6	1	320	IPR044594	GO:0046872
	Lal11g1168	320	CDD	HMA	35	89	IPR006121	GO:0046872
	Lal11g1168	320	PANTHER	HEAVY METAL-ASSOCIATED DOMAIN PROTEIN	1	320	-	-
	Lal11g1168	320	MobiDBLite	consensus disorder prediction	87	123	-	-
	Lal11g1168	320	MobiDBLite	consensus disorder prediction	102	123	-	-
	Lal11g1168	320	MobiDBLite	consensus disorder prediction	1	26	-	-
	Lal11g1168	320	Coils	Coil	110	131	-	-
	Lal11g1168	320	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lal11g1168	320	CDD	HMA	138	193	IPR006121	GO:0046872
	Lal11g1168	320	Pfam	Heavy-metal-associated domain	34	87	IPR006121	GO:0046872
	Lal11g1168	320	Pfam	Heavy-metal-associated domain	137	193	IPR006121	GO:0046872
	Lal11g1168	320	MobiDBLite	consensus disorder prediction	200	228	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal11g1168	Lal-Chr11	15422944	15424994	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal11g1168	-		-	gmx:100795652	333.569

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal11g1168	11	15422944	15424994	Lal11g1168	11	15422944	15424994	ECH
	Lal11g1168	11	15422944	15424994	Lal1g1805	1	20394126	20396699	LSH
	Lal11g1168	11	15422944	15424994	Lal20g0107	20	695510	697515	LSH