Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0061 ATGGCTGAAATCGTGGTTGATTCCGAGTTGGATGGCGAAATTACTGGAAATGTGGTTCAATCCATTGAGACTCAGAACAAGGTTTTGTCCTATAATCATTCCTCACATCCACCTTTAAATGAGAGGATTATATCATCCATGATCAGGAGGTCTACTGCTGCACATCCTTGGCATGACCTTGAAATAGGACCTGGAGCTCCACTGATCTTCAACTGTGTGATTGAGATTGCTAAAGGGAGCAAGGTGAAATATGAACTTGACAAAAAAACTGGACTTATTAAGGTCGACCGTGTACTTTACTCATCCGTTGTGTATCCCCAAAACTATGGGTTTATCCCACGTACTATCTGTGAGGACAGTGATCCCCTTGATGTCTTGGTTATCATGCAGGAGCCTGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCCATGATTGATCAGGGTGAGAAAGATGACAAAATAATTGCTGTCTGTGCTGATGATCCTGAGTATCGACATTACAATGATATTAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGATTACAAGAAGAATGAGAACAAGGAAGTTGCTGTAGACCACTTTTTGCCTGCCTCAGCTGCCTTTGAAGCCGTCAAGCATTCCATGACCCTGTATGCGGACTATATTGTAGAGAGCTTGAGGCGTTAG 702 0.433 MAEIVVDSELDGEITGNVVQSIETQNKVLSYNHSSHPPLNERIISSMIRRSTAAHPWHDLEIGPGAPLIFNCVIEIAKGSKVKYELDKKTGLIKVDRVLYSSVVYPQNYGFIPRTICEDSDPLDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVDHFLPASAAFEAVKHSMTLYADYIVESLRR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0061 233 ProSitePatterns Inorganic pyrophosphatase signature. 119 125 - -
Lal20g0061 233 CDD pyrophosphatase 69 220 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lal20g0061 233 PANTHER INORGANIC PYROPHOSPHATASE 39 232 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lal20g0061 233 SUPERFAMILY Inorganic pyrophosphatase 50 228 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lal20g0061 233 PANTHER BNAC07G03580D PROTEIN 39 232 - -
Lal20g0061 233 Hamap Inorganic pyrophosphatase [ppa]. 68 224 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lal20g0061 233 Pfam Inorganic pyrophosphatase 72 223 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Lal20g0061 233 Gene3D Inorganic pyrophosphatase 51 229 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0061 Lal-Chr20 409115 413830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0061 K01507 - gmx:100784203 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1119 11 14946021 14952658 Lal20g0061 20 409115 413830 LSH
Lal20g0061 20 409115 413830 Lal24g0827 24 6563943 6567626 PCT
Lal24g0827 24 6563943 6567626 Lal20g0061 20 409115 413830 PCT