Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2054 ATGGCCACGTTCAAGAGCTATAGCAGTGTCTGCACCATAGGAATCGCTTTTCCAAGGAACTCAAACCGGAAGCCTATACAAGCAGCCATTGTACCAAGTTTCCACCTCCCAATGCGCAGCTCCGAGGTGAAAAATAGGACTTCTACAGAGGACATAAAGAGTCTGAGATTAATAACTGCCATTAAAACTCCATACCTTCCTGATGGCCGATTTGATCTTGAAGCATATGACGATTTGATGAATATGCAGATTGAAAACGGAGCTGAAGGTGTTATTGTTGGTGGGACAACCGGTGAAGGTCAATTGATGAACTGGGATGAACATGTAATGCTTATTGGGCACACAGTGAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAACACCGGAAGCAACTCCACCGGGGAAGCAATTCATGCCACTGAGCAAGGTTTTGCTGTAGGAATGCATGCTGCACTTCATATAAACCCTTACTATGGAAAAACTTCCTTGAATGGTTTGGTTTCTCACTTTGAGAGTGTGCTTTCCATGGGCCCCACCATTATATATAATGTGCCATCGCGAACTGGTCAAGACATTCCTCCACATATAATTCAAACCTTAGCTCAAAGTTTTACCTTGGCTGGTGTCAAGGAATGCGTTGGAAACGACCGGATCAAGCAGTACACAGATAATGGTATTGTTGTGTGGAGTGGGAATGATGATCAATGTCATGATGCTAGATGGGGTTATGGGGCTACTGGAGTAATATCTGTTGTAAGCAACCTGGTTCCTGGTTTAATGCGAGAACTCATGTTCGCTGGAAACAATCCTACACTGAATTCTAAGCTCTTGCCTTTGATCGACTGGCTTTTCCACGAGCCAAACCCCATCGGTTTGAACACGGCTCTCGCTCAGCTTGGGGTTGTTAGGCCAGTTTTCAGGCTACCATATGTACCCCTCCGTGTCGAGAAAAGGATAGAGTTTGTCAACTTGGTGAAGAATATTGGACGCAAGCATTTTGTTGGAGAAAAAGATGTGGAGGTTCTTGATGACAACGACTTTATCATAGTTCATCGATATTAA 1065 0.4394 MATFKSYSSVCTIGIAFPRNSNRKPIQAAIVPSFHLPMRSSEVKNRTSTEDIKSLRLITAIKTPYLPDGRFDLEAYDDLMNMQIENGAEGVIVGGTTGEGQLMNWDEHVMLIGHTVNCFGGKIKVIGNTGSNSTGEAIHATEQGFAVGMHAALHINPYYGKTSLNGLVSHFESVLSMGPTIIYNVPSRTGQDIPPHIIQTLAQSFTLAGVKECVGNDRIKQYTDNGIVVWSGNDDQCHDARWGYGATGVISVVSNLVPGLMRELMFAGNNPTLNSKLLPLIDWLFHEPNPIGLNTALAQLGVVRPVFRLPYVPLRVEKRIEFVNLVKNIGRKHFVGEKDVEVLDDNDFIIVHRY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2054 354 PANTHER DIHYDRODIPICOLINATE SYNTHASE 24 354 IPR002220 GO:0016829
Lal1g2054 354 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 57 324 IPR005263 GO:0008840|GO:0009089
Lal1g2054 354 PRINTS Dihydrodipicolinate synthase signature 87 108 IPR002220 GO:0016829
Lal1g2054 354 PRINTS Dihydrodipicolinate synthase signature 123 141 IPR002220 GO:0016829
Lal1g2054 354 PRINTS Dihydrodipicolinate synthase signature 155 171 IPR002220 GO:0016829
Lal1g2054 354 PRINTS Dihydrodipicolinate synthase signature 178 195 IPR002220 GO:0016829
Lal1g2054 354 ProSitePatterns Dihydrodipicolinate synthase signature 2. 183 213 IPR020625 GO:0016829
Lal1g2054 354 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC 24 354 - -
Lal1g2054 354 Pfam Dihydrodipicolinate synthetase family 55 328 IPR002220 GO:0016829
Lal1g2054 354 Gene3D Aldolase class I 48 354 IPR013785 -
Lal1g2054 354 SMART DHDPS_2 54 330 IPR002220 GO:0016829
Lal1g2054 354 SUPERFAMILY Aldolase 57 329 - -
Lal1g2054 354 CDD DHDPS 56 326 IPR005263 GO:0008840|GO:0009089
Lal1g2054 354 ProSitePatterns Dihydrodipicolinate synthase signature 1. 90 107 IPR020624 GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2054 Lal-Chr1 22706785 22710759 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2054 K01714 - gmx:100788930 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2054 1 22706785 22710759 Lal1g2054 1 22706785 22710759 ECH
Lal1g2054 1 22706785 22710759 Lal14g0896 14 11362644 11365887 PCT
Lal1g2054 1 22706785 22710759 Lal19g0228 19 2131794 2139588 PCT
Lal14g0896 14 11362644 11365887 Lal1g2054 1 22706785 22710759 PCT
Lal19g0228 19 2131794 2139588 Lal1g2054 1 22706785 22710759 PCT