Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g2044 ATGGGTTTGTTTTCTGGAATTTTTCTTGGGATTGTGTTTGGCTTTGCATTGATGGCTGGGTGGCAACGTATGATGATGTACCGAAGCGCCAAGCGAATCGCGAAGAAAAATTTGGGATATCACGAAGATCATGTACCTCATCGACAAGTCAGAATACCACAATTTTCCTCTCCGGCAGTTGATGTTAAACTCCTTGGATCCCTGAACAGAGATGATTTAAAGAAGATTTGTGGCGATAATTTTCCTGAATGGATATCTTTTCCTGTATATGAGCAGGCAGCAACAATGGTGATTAGAGAATCTGTTGAACCACTATTGGAAGAGTACAGACCCCCTGGAATAACTTCATTGAAGTTCAGCAAGCTGTCTCTTGGAAATGTTGCTCCAAAGATTGAAGGTATTCGGGTCCAGAGTCTTAAAAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGCGATCCCAATATTATTTTGGCTGTTGAAGCTGCACTTGTTGCATCCATCCCTATTCAGTTCAAGGATCTCCAGATTTTCAGCATTATCCGAGTAATATTCCAACTTTCTGAAGAGATCCCCTGCATTTCTGCTGTTGTTGTTGCCCTACTTGCTGAGCCTAAGCCTAGAATTGATTACACTCTTAAGGCTGTTGGTGGAAGTTTGACAGCTCTTCCTGGAGTTTCCGACATGATCGATGATACTGTGACATCTATTATTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCACTTGGAGGTGTACCTGTTGATACTAGTGAACTGGAGCTTAAACCACAGGGAAGGCTTACAGTGACTGTAGTGAAAGCGGATCATTTAAAGAATAAGGAAATGATCGGGAAGTCTGATCCTTACGTAGTTGTGCATATACGGCCGCTATTTAAGGTTAAAACCATGGTCATTGATAACAACCTGAATCCTGTTTGGAATGAGGTATTTGAGTTGATTGCAGAAGACAAGGAGACTCAATCACTCATTCTCGAGGTTTATGATGAAGACATTGGGCAAGATAAGCGACTAGGGATCGCGAAATTACCACTTATTGATCTGGAAGCAGAAACTGAAAAGGAGTTCGAACTAGGGTTGCTGTCATCGCTTGATACCCAAAAGGTGAAAGATAAGAAGGATCGAGGAACCTTGACAATAAAGGTCGTTTATCATCATTTCAGCAAGGAAGAGCAGTTGGGTGCACTAGAAGCAGAGAAAAGGATACTAGAAGAAAGGAAGAAACTGAAAGAGGAAGGAGTTATAGGAAGTACAATGGATGCACTAGATGGAGCAACATCAGTAGTTGGGTCTGGTGTTGAACTTATTGGCAGCGGCATTGGTGCTGGAGCCGGCCGAGTCGGCAGTGGCATTGGTGCTGGAGCTGGATTTGTTGGCAGTAGTCTTGGCGCGGTTGGTAGCGGATTAAGCCGAGCAGGAAAATTTATGGGCAGGACAATCACAGGGCAAAGTGCTACCAGAAGGAGTGCTCCATCAACTCCAGTTAATAATCTAGAGACTGGTGGTGGTGCAAAGCCTCGTTAA 1557 0.4348 MGLFSGIFLGIVFGFALMAGWQRMMMYRSAKRIAKKNLGYHEDHVPHRQVRIPQFSSPAVDVKLLGSLNRDDLKKICGDNFPEWISFPVYEQAATMVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLKKGQIIMDIDFRWGGDPNIILAVEAALVASIPIQFKDLQIFSIIRVIFQLSEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTALPGVSDMIDDTVTSIITDMLQWPHRIVVPLGGVPVDTSELELKPQGRLTVTVVKADHLKNKEMIGKSDPYVVVHIRPLFKVKTMVIDNNLNPVWNEVFELIAEDKETQSLILEVYDEDIGQDKRLGIAKLPLIDLEAETEKEFELGLLSSLDTQKVKDKKDRGTLTIKVVYHHFSKEEQLGALEAEKRILEERKKLKEEGVIGSTMDALDGATSVVGSGVELIGSGIGAGAGRVGSGIGAGAGFVGSSLGAVGSGLSRAGKFMGRTITGQSATRRSAPSTPVNNLETGGGAKPR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g2044 518 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 268 398 IPR035892 -
Lal1g2044 518 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 255 IPR031468 GO:0008289
Lal1g2044 518 MobiDBLite consensus disorder prediction 492 510 - -
Lal1g2044 518 Gene3D C2 domain 265 424 IPR035892 -
Lal1g2044 518 ProSiteProfiles C2 domain profile. 253 369 IPR000008 -
Lal1g2044 518 Coils Coil 397 424 - -
Lal1g2044 518 CDD C2 272 366 - -
Lal1g2044 518 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 88 254 IPR039010 -
Lal1g2044 518 MobiDBLite consensus disorder prediction 492 518 - -
Lal1g2044 518 SMART C2_3c 271 368 IPR000008 -
Lal1g2044 518 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 36 - -
Lal1g2044 518 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 58 510 - -
Lal1g2044 518 Pfam C2 domain 270 365 IPR000008 -
Lal1g2044 518 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 36 IPR045050 GO:0008289
Lal1g2044 518 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 58 510 IPR045050 GO:0008289
Lal1g2044 518 PRINTS C2 domain signature 287 299 IPR000008 -
Lal1g2044 518 PRINTS C2 domain signature 312 325 IPR000008 -
Lal1g2044 518 PRINTS C2 domain signature 334 342 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g2044 Lal-Chr1 22594320 22601587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g2044 272 370 Lipid Metabolism Gene Families AT4G00700 37.374 1.55e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g2044 - - gmx:100777838 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g2044 1 22594320 22601587 Lal14g0907 14 11504860 11512625 PCT
Lal1g2044 1 22594320 22601587 Lal7g0152 7 1719670 1727018 PCT
Lal14g0907 14 11504860 11512625 Lal1g2044 1 22594320 22601587 PCT
Lal7g0152 7 1719670 1727018 Lal1g2044 1 22594320 22601587 PCT