Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1902 ATGGGTGGAGAAGATAGTGATGGACTTGACAGCGATGGATATATACCTGAGGATCCACATTTTTTTCCAAAATTTGATTTTGATGATGAAAACGATAGTGATAACTTTGGATTTTCGAACATACTACACCCTGATCAATATGATGCTGGTGATTTGGTTGGAGAAGCCAATCCTAATGAAAACTATTTTGATGGAAGTTATCTCGGATATTTGCCAAAGAGTCCTGATTTTTTCATAGATATAAATTCTGATATGGAAACTGAGGTTAATAACGATGAATTTCATGAGCTACTACAACCTAATGAACATGGTACAAGCACTTTGGTAGAGAATGCTGCAAACCCTAATGAAAACCATTTTGATGAACATGATGTTGCATATGTTCCTCAAGATCCGGTTTTTCCCCAACAAATAATTCACACTCATCAGGGAATTGCACCCTTTGTCTTTGAATTTTCTCATCCAGAAGAACATGATGATGCAGACACTTTAATTGAGAATGCCAATATTTCTGAAAACTATACTCATGGACATGATGTTGAAAATTTTCCTGAAAACATAGATTATCTCTCACATGAGCATATCATTGAGGAGCATCATGTTGAAGGAAACATGATTGGAAACTTTGCTACTTCTGAACAACATGAATCCGAGAATGATTATTCTAGAGGAAATAGAACAGAAAAGTGGCCTGGATGGCCTGGGCAAAACGTGTTCAGGTTGTTGGTTCCAGTGAAAAAAGTTGGCTGTATTATTGGCCCTAAGGGAGAGTATATTAAGAAAACTACTGAAGAGACTAAGGCACGCATTAAAGTTCTTGGTGGTCAACCCGGAATAACAGAAAGAGCATATAGTGATCTATGTCTGCTGCGTGTGATGCTTATTAAGCATGTATTGATTTCTGCAAGAGAAGTACCACATTGCACTGTGCCACCCGCTGTGAAGGGTTTGTTAAGGGTTCATGAACAAGTTCTCAATGACACTGTTTCTATCACATCCGGTGCTGTATGCTCTATCACCACTAGGCTTCTAGTGCCAGATACTCAAGGACGAAGCTTGATCGGCAAGCAGGGTTTAATGATAAGATCCATCCAAGAGAATACCGGTTGCATTATACGTGTTCTTAGATCAGGAAGCAGACCAGTTTTTGCTTTGAAAGATGATAGTGTTGTTGAAATACATGGAGAATCTGGCGGAGTTCACAAAGCTGTTGAACTTATTGCACTTCATTTACGACAGTACTTGGTCGATCACAGCATAATCGGAATGCAAAGGCTAAATGTTCAAGTTAACAACAATATGATACCATCCCAACCTTGGGGTGTTCCTCCTGTAGGACTCGATTTTGCATCGAACAATCAATACATGCCGCATTTTCAACACTATGGTAATTATTACCACCCTGCTACCTTGCCTCCTAACCACCTTCCTCAGGATCCACCACCTGCCTATGCAACAGATTCTTCCATCGAAATTCATTCATCAAGTGTAGAACCAAAATCGTCGGTCGAGGCTAAGATATCATGTAATTTCCTTTCTACTGCACAGGACACACAATACATCCAAATTCCTATGTCATACGCGGACGCTGTTATTGGAGCATCGGGCGCAAATATCAGCTACATTCGTAGTGCTAGTGGAGCAAGTGTTACAATTCGGGAGGCAGAGGGTATGCCAGGGCGGATGACTGTCGAGATCAGCGGGACTTCTTCCGAAATACAGACAGCTGAACTCCTTGTTCAGAATTTTGTGGATGGGGCTACTACATGTGCAGAACAAGATCATATGGAGGGATCACATAGCCAAAGTGAGAGTTCATATGCACCTTCTCCATCCTCTGGTGCTACTGATCACAAACATTGGCCTTCACCAAATCATGTTCACTTAGATGAGTAA 1896 0.4082 MGGEDSDGLDSDGYIPEDPHFFPKFDFDDENDSDNFGFSNILHPDQYDAGDLVGEANPNENYFDGSYLGYLPKSPDFFIDINSDMETEVNNDEFHELLQPNEHGTSTLVENAANPNENHFDEHDVAYVPQDPVFPQQIIHTHQGIAPFVFEFSHPEEHDDADTLIENANISENYTHGHDVENFPENIDYLSHEHIIEEHHVEGNMIGNFATSEQHESENDYSRGNRTEKWPGWPGQNVFRLLVPVKKVGCIIGPKGEYIKKTTEETKARIKVLGGQPGITERAYSDLCLLRVMLIKHVLISAREVPHCTVPPAVKGLLRVHEQVLNDTVSITSGAVCSITTRLLVPDTQGRSLIGKQGLMIRSIQENTGCIIRVLRSGSRPVFALKDDSVVEIHGESGGVHKAVELIALHLRQYLVDHSIIGMQRLNVQVNNNMIPSQPWGVPPVGLDFASNNQYMPHFQHYGNYYHPATLPPNHLPQDPPPAYATDSSIEIHSSSVEPKSSVEAKISCNFLSTAQDTQYIQIPMSYADAVIGASGANISYIRSASGASVTIREAEGMPGRMTVEISGTSSEIQTAELLVQNFVDGATTCAEQDHMEGSHSQSESSYAPSPSSGATDHKHWPSPNHVHLDE 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1902 631 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 160 614 - -
Lal1g1902 631 Gene3D K Homology domain, type 1 509 587 IPR036612 GO:0003723
Lal1g1902 631 ProSiteProfiles Type-1 KH domain profile. 338 407 - -
Lal1g1902 631 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 335 420 IPR036612 GO:0003723
Lal1g1902 631 ProSiteProfiles Type-1 KH domain profile. 516 580 - -
Lal1g1902 631 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 230 282 IPR036612 GO:0003723
Lal1g1902 631 CDD KH-I 518 581 - -
Lal1g1902 631 CDD PCBP_like_KH 238 321 - -
Lal1g1902 631 MobiDBLite consensus disorder prediction 593 619 - -
Lal1g1902 631 Pfam KH domain 340 408 IPR004088 GO:0003723
Lal1g1902 631 Pfam KH domain 518 581 IPR004088 GO:0003723
Lal1g1902 631 Pfam KH domain 239 277 IPR004088 GO:0003723
Lal1g1902 631 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 160 614 - -
Lal1g1902 631 MobiDBLite consensus disorder prediction 593 631 - -
Lal1g1902 631 MobiDBLite consensus disorder prediction 1 26 - -
Lal1g1902 631 CDD PCBP_like_KH 340 408 - -
Lal1g1902 631 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 515 586 IPR036612 GO:0003723
Lal1g1902 631 Gene3D K Homology domain, type 1 338 415 IPR036612 GO:0003723
Lal1g1902 631 Gene3D K Homology domain, type 1 238 324 IPR036612 GO:0003723
Lal1g1902 631 ProSiteProfiles Type-1 KH domain profile. 236 272 - -
Lal1g1902 631 SMART kh_6 515 585 IPR004087 GO:0003676
Lal1g1902 631 SMART kh_6 337 412 IPR004087 GO:0003676
Lal1g1902 631 SMART kh_6 235 300 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1902 Lal-Chr1 21248182 21252288 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1902 K21444 - gmx:100813235 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1902 1 21248182 21252288 Lal12g0173 12 1218866 1224496 PCT
Lal1g1902 1 21248182 21252288 Lal13g0149 13 960377 966064 PCT
Lal12g0173 12 1218866 1224496 Lal1g1902 1 21248182 21252288 PCT
Lal13g0149 13 960377 966064 Lal1g1902 1 21248182 21252288 PCT