Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0149 ATGGTTTCTGCAAAAGAAGAGCCTGATCGCACCGTACCGCCTGCTGTGGAAGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATATTGACCAAGATCCTGCAGATAGTGCATCAGGTGCAGGACGGCCGGTTGTCACAAGGCTTCTAGTGGCAGATACTCAAGCTGGAAGTTTGATTGGGAAGCAGGGGTCCACTATAAAATCCTTCCAAGATGCCTCTGGTTGCAATATACGTGTTCTTGGATCAGTGGAACACTTGCCAACTTTTGCTCTGCGAGATGATAGTGTTGTTGAAATACAAGGGGAGTCTGCTGGGGTTCACAAGGGAGTTGAACTTATAGCACTTCATCTACGTAAGTTCTTGGTTGACCGCAGCATAGTTGGAATGCAAAGGCTGGATGTTCGAGTTAACCATAATATGCCACCACACCAACCACACCTCCGACCTTGGGGTCCACCTCCTCGTCAAGATTTTCCGGCTCCTGGTGGATCTGCTTTTGCACCCAATCCTCACTTTATGCCACCTTCACATAACTATGATAACTATTATCCACCTACTGACTTGCCTCCCATGGAAAAGCACCTTCATCAGGCTCCACCACCTGCCTATTCAAGGGATCCTTCTATGGGAATTCATTCATCCAGTGCACCACCTCAGCAATCTGCTGTGACTAAGGTCACACAGCACATGCAAATTCCTCTTTCCTATGCAGATGCTGTTATTGGAGCATCAGGATCAAATATCAGCTACATTCGTCGTGCTAGTGGGGCAAGTGTTACCATTCAGGAGACTAGAGGTGTGCCAGGGGAGATGACCGTTGAGATAAATGGTACTGCATCACAAATACAGACAGCCCAACAGCTTGTGCAGTACAGAATGACAACAGATGAAGTTAGGCTAAATAATTTCATGGCTGAAGCTGCAAATGCTGCATCTCAGCAGGATCAAATGGGGGGAACAGTGAACCAAGGTTACAATGCCTATCCGACTAATGCTCCTGTTTATCAATCTCCACCGTCAAATGCTAGTGGCCATGCTCCTTCTGCAGACTATGGTTCAGTATATGGCACCAATTATGGATATTAA 1086 0.465 MVSAKEEPDRTVPPAVEGLLRVHKQVVNIDQDPADSASGAGRPVVTRLLVADTQAGSLIGKQGSTIKSFQDASGCNIRVLGSVEHLPTFALRDDSVVEIQGESAGVHKGVELIALHLRKFLVDRSIVGMQRLDVRVNHNMPPHQPHLRPWGPPPRQDFPAPGGSAFAPNPHFMPPSHNYDNYYPPTDLPPMEKHLHQAPPPAYSRDPSMGIHSSSAPPQQSAVTKVTQHMQIPLSYADAVIGASGSNISYIRRASGASVTIQETRGVPGEMTVEINGTASQIQTAQQLVQYRMTTDEVRLNNFMAEAANAASQQDQMGGTVNQGYNAYPTNAPVYQSPPSNASGHAPSADYGSVYGTNYGY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0149 361 MobiDBLite consensus disorder prediction 197 218 - -
Lal13g0149 361 ProSiteProfiles Type-1 KH domain profile. 43 113 - -
Lal13g0149 361 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 1 355 - -
Lal13g0149 361 CDD KH-I 227 290 - -
Lal13g0149 361 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 355 - -
Lal13g0149 361 Gene3D K Homology domain, type 1 213 298 IPR036612 GO:0003723
Lal13g0149 361 SMART kh_6 42 118 IPR004087 GO:0003676
Lal13g0149 361 SMART kh_6 224 294 IPR004087 GO:0003676
Lal13g0149 361 ProSiteProfiles Type-1 KH domain profile. 225 289 - -
Lal13g0149 361 CDD PCBP_like_KH 45 114 - -
Lal13g0149 361 Pfam KH domain 46 114 IPR004088 GO:0003723
Lal13g0149 361 Pfam KH domain 227 290 IPR004088 GO:0003723
Lal13g0149 361 Gene3D K Homology domain, type 1 40 119 IPR036612 GO:0003723
Lal13g0149 361 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 215 295 IPR036612 GO:0003723
Lal13g0149 361 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 35 127 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0149 Lal-Chr13 960377 966064 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0149 K21444 - gmx:100818363 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0149 13 960377 966064 Lal13g0149 13 960377 966064 ECH
Lal12g0173 12 1218866 1224496 Lal13g0149 13 960377 966064 LSH
Lal1g1902 1 21248182 21252288 Lal13g0149 13 960377 966064 PCT
Lal13g0149 13 960377 966064 Lal1g1902 1 21248182 21252288 PCT