Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal12g0173 ATGTCTGGGGAAGTTGTTTTTGATGGACAAGATGCTGGTTATGTGCCGGAGAACCTTGATTATCCGCAAAACCATTCCGATGAACATGATGAAGGAAATGTGATTGATGATGAATCTGGGTTTCCTCAACTGCAGCCTGATGAACATGATGCCGAAATTTTAGCCGAGGAGGAAGCCGATCCTCTCGAAAATGAATTTGATGATCATGGTGTTGAAGAACTACCTGAAAACACTGATTCCCTTCCACAAGAGCATACTGTAACTGAGGAGGAACATCATGATGGAGGAGATGTGACTGAAAATTTTACTTCTCAAGAAGTAGAAGGGCCTGAGGGTGATTCGAAACCAAGTGAAATAAAAAAATGGCCAGGTTGGCCTGGAGAGAATGTTTTTAGAATGCTGGTTCCTGTGCAAAAGGTTGGTAGTATTATTGGCCGCAAGGGAGAGTTTATCAAAAAAATCACCGAGGAGACTAAAGCTCGAATTAAGATTCTTGATGGTCCACCAGGAACTACTGAGAGAGCAGTAATGGTTTCTGCGAAAGAAGAGCCAGATCGCACCATACCACCTGCTGTGGAAGGTTTGTTAAGGGTTCACAAACAAGTTGTCAATGTCGACCAAGATCCCGCCGAAAGTGCATCAGGTGCAGGACGTCCAGTTGTTACAAGGCTTCTAGTGGCAGATACTCAAGCTGGAAGTTTGATTGGGAAGCAGGGGTCCACTATAAAATCCTTCCAGGATGCTTCTGGTTGCAATATACGTGTTCTTGGATCAGCAGAACACTTGCCAATATTTGCTCTGCGAGATGACAGTGTTGTTGAAATACAAGGGGAGTCTGCTGGGGTTCACATGGGAGTTGAACTTATTGCACTTCATCTACGTAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTGTTTGAAGCAAAGATGCAAAGGCCAGATGTTCGAGTTAACCAGAATATGCCTCCACATCAACCACACCAACCACACCACCAACCTTGGGGTCCTCCTCCTCCTCAAGGGTTTCAGGCTCCTGGAGGTAGTGGTGGACCTGCTTTTGCACCTAATCCTCAACTTATGCCACCTCCACATAACTATGATAACTATTACCCACCTGCTGATCTGCCTCCCATGGACAAGCACCTTCATCAGGGTCCACCACCTGCCTATGCAAGGGATCCTTCTATAGGAATTCATTCATCTACTGCACCACCACAACAATCTGTTGTAACTAAGGTCACACAGCACATGCAAATTCCTCTATCCTTTGCAGATGCTGTTATTGGAGCATCAGGTTCAAATATCAGCTACATCCGCCGTGCTAGTGGGGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCAGGGGAGATGACTGTTGAGATAAGTGGTACTGCATCACAAATACAGGCAGCCCAACAGCTGGTGCAGAATTTCATGGCTGAAGCTGCAAGTGCTGCATCGCAGCAGGAACATATGGGGGGATCAATGAACCAAGGTTACAATGCCTATCCGACTAATGCTCCTGTCTATCAATCTCCACCTTCAAATGCTAGTGGCCATACAGGCCATGCGCCTTCTGCAGACTATGGTTCTGTATATGGTACCAATTATGGCTATTAA 1623 0.4603 MSGEVVFDGQDAGYVPENLDYPQNHSDEHDEGNVIDDESGFPQLQPDEHDAEILAEEEADPLENEFDDHGVEELPENTDSLPQEHTVTEEEHHDGGDVTENFTSQEVEGPEGDSKPSEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTTERAVMVSAKEEPDRTIPPAVEGLLRVHKQVVNVDQDPAESASGAGRPVVTRLLVADTQAGSLIGKQGSTIKSFQDASGCNIRVLGSAEHLPIFALRDDSVVEIQGESAGVHMGVELIALHLRKFLVDRSIVGVFEAKMQRPDVRVNQNMPPHQPHQPHHQPWGPPPPQGFQAPGGSGGPAFAPNPQLMPPPHNYDNYYPPADLPPMDKHLHQGPPPAYARDPSIGIHSSTAPPQQSVVTKVTQHMQIPLSFADAVIGASGSNISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASAASQQEHMGGSMNQGYNAYPTNAPVYQSPPSNASGHTGHAPSADYGSVYGTNYGY 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal12g0173 540 MobiDBLite consensus disorder prediction 320 372 - -
Lal12g0173 540 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 52 534 - -
Lal12g0173 540 MobiDBLite consensus disorder prediction 355 370 - -
Lal12g0173 540 Pfam KH domain 414 477 IPR004088 GO:0003723
Lal12g0173 540 Pfam KH domain 222 289 IPR004088 GO:0003723
Lal12g0173 540 Pfam KH domain 131 183 IPR004088 GO:0003723
Lal12g0173 540 MobiDBLite consensus disorder prediction 71 99 - -
Lal12g0173 540 CDD KH-I 414 477 - -
Lal12g0173 540 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 213 302 IPR036612 GO:0003723
Lal12g0173 540 SMART kh_6 127 200 IPR004087 GO:0003676
Lal12g0173 540 SMART kh_6 411 481 IPR004087 GO:0003676
Lal12g0173 540 SMART kh_6 218 294 IPR004087 GO:0003676
Lal12g0173 540 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 52 534 - -
Lal12g0173 540 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 119 183 IPR036612 GO:0003723
Lal12g0173 540 ProSiteProfiles Type-1 KH domain profile. 412 476 - -
Lal12g0173 540 MobiDBLite consensus disorder prediction 1 120 - -
Lal12g0173 540 Gene3D - 128 297 - -
Lal12g0173 540 MobiDBLite consensus disorder prediction 51 70 - -
Lal12g0173 540 MobiDBLite consensus disorder prediction 326 344 - -
Lal12g0173 540 ProSiteProfiles Type-1 KH domain profile. 219 289 - -
Lal12g0173 540 Gene3D K Homology domain, type 1 400 489 IPR036612 GO:0003723
Lal12g0173 540 CDD PCBP_like_KH 130 199 - -
Lal12g0173 540 MobiDBLite consensus disorder prediction 22 36 - -
Lal12g0173 540 CDD PCBP_like_KH 221 290 - -
Lal12g0173 540 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 403 483 IPR036612 GO:0003723
Lal12g0173 540 ProSiteProfiles Type-1 KH domain profile. 128 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal12g0173 Lal-Chr12 1218866 1224496 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal12g0173 K21444 - gmx:100818363 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0173 12 1218866 1224496 Lal12g0173 12 1218866 1224496 ECH
Lal12g0173 12 1218866 1224496 Lal13g0149 13 960377 966064 LSH
Lal1g1902 1 21248182 21252288 Lal12g0173 12 1218866 1224496 PCT
Lal12g0173 12 1218866 1224496 Lal1g1902 1 21248182 21252288 PCT