Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0536 ATGCAGCTTCATATATCACCAAGTTTAAGGCATGTCACTTTGCTTCCGGGAAAAGGGTTGAAGGAGTTTATCAAAGTGAAAGTTTCATCCAGGAAGCTTTCTTATCGGATGCTCTTCTATGCACTCTTGTTCTTCACATTTCTTCTACGGTTTGTGTTTGTTTTGACAGCAGTGGATAGCATCGATGGAGAAAACAAGTGCTCTACCATAGGTTGCCTGGGAAAAAAACTGAGGCCAAAGATTTTGGGAAGAAGTCTTGAATCAAGTGTCCCTGAAGTCATGTATGGTATATTAGATCAACCCCTTGGCAAAGATGAACTAGAGGGAAGGTCTGATATTCCACAAACTTTAAAAGAGTTTATGACCGAAATGAAGGAAGGTGGATATGATGCCAAGACATTTGCAATTAAACTAAGAGAAATGGTAAGCCTTATGGAACAAAGGACCAGGATAGCCAAAATCCAAGAATATTTATATCGTCACATCGCATCAAGCAGCATACCTAAAGAGCTTCACTGCCTTCACTTGAGGCTGGCCAATGAGCACGCTAGCAATGCAGCAGCACGCCTTCAGCTACCCCCCGCAGAGCTAGTCCCGGCCTTGGTTGACAACTCCTACTTCCATTTTGTCCTTGCATCGGACAATGTTCTTGCCGCCTATGTGGTTGCAACATCACTTGTCCGCAACAGTCTGAGACCTCAGAAAGTTGTTCTGCACATAATTACAGATAAAAAGACATATTATCCTATGCAGGCTTGGTTTTCTTTGCACCCTTTATCACCTGCTGTAATTGAGGTCAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGAAAGGTGCCTGTGCTGGAAGCTATGGAAAAAGATCAACAGGTGCGGTCACAGTTTAGAGGGGGTTCATCATCCATTGTTGCGAATACTACTGAGAAGCCTAAAGTTATTGCAGCAAAGCTGCAAGCACTTAGTCCAAAGTATAATTCAGTGATGAACCACATCAGGATACATCTACCAGAGTTGTTCCCAAGTCTTGACAAGATAGTCTTCCTCGATGATGACATTGTGGTACAAACCGATCTTTCACCTTTGTGGGACATCGACATGGATGGAAAAGTTAATGGAGCAGTAGAAACATGCACTGGACAAGATAAGTTTGTGATGTCAAAGAGGCTGAGAAGCTATTTGAACTTCTCTCACCCTCTAATATCCAAAAATTTTGATCCCAATGAATGTGCTTGGGCTTATGGCATGAACATTTTTGACCTGGAGGCTTGGAGGAACACCAATATAAGCCTTACATACCATTACTGGGTTGAACAGAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCTCCTGGATTAATAGCATTCCATGGCCATGTCCACAACATTGATCCTTTCTGGCACATGCTGGGATTGGGATATCAGGAAAATACAAGTTTAGCAGAAGCTAAGAGTGCCGGAGTCATCCATTTCAACGGCAGGGCAAAGCCATGGCTACATATAGCTTTGCCACAACTTAGGTCATTGTGGACCAAATATATTGACTTTTCGGATAACATCATCAGGAGCTGTCACATTAGGGAATCATCATAA 1605 0.4255 MQLHISPSLRHVTLLPGKGLKEFIKVKVSSRKLSYRMLFYALLFFTFLLRFVFVLTAVDSIDGENKCSTIGCLGKKLRPKILGRSLESSVPEVMYGILDQPLGKDELEGRSDIPQTLKEFMTEMKEGGYDAKTFAIKLREMVSLMEQRTRIAKIQEYLYRHIASSSIPKELHCLHLRLANEHASNAAARLQLPPAELVPALVDNSYFHFVLASDNVLAAYVVATSLVRNSLRPQKVVLHIITDKKTYYPMQAWFSLHPLSPAVIEVKALHHFDWFTKGKVPVLEAMEKDQQVRSQFRGGSSSIVANTTEKPKVIAAKLQALSPKYNSVMNHIRIHLPELFPSLDKIVFLDDDIVVQTDLSPLWDIDMDGKVNGAVETCTGQDKFVMSKRLRSYLNFSHPLISKNFDPNECAWAYGMNIFDLEAWRNTNISLTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHNIDPFWHMLGLGYQENTSLAEAKSAGVIHFNGRAKPWLHIALPQLRSLWTKYIDFSDNIIRSCHIRESS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0536 534 Pfam Glycosyl transferase family 8 206 505 IPR002495 GO:0016757
Lal1g0536 534 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 12 531 IPR029993 GO:0047262
Lal1g0536 534 CDD GT8_like_1 207 519 - -
Lal1g0536 534 PANTHER GALACTURONOSYLTRANSFERASE 12-RELATED 12 531 - -
Lal1g0536 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 523 IPR029044 -
Lal1g0536 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0536 Lal-Chr1 3448585 3452187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0536 1 533 Glycosyltransferase AT5G54690 77.196 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0536 K20867 - gmx:100777811 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0536 1 3448585 3452187 Lal1g0536 1 3448585 3452187 ECH
Lal10g0649 10 14310725 14314432 Lal1g0536 1 3448585 3452187 PCT
Lal8g0864 8 6287265 6294893 Lal1g0536 1 3448585 3452187 PCT
Lal1g0536 1 3448585 3452187 Lal10g0649 10 14310725 14314432 PCT
Lal1g0536 1 3448585 3452187 Lal8g0864 8 6287265 6294893 PCT