Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0335 ATGGCAGCCAATTCTTCTAATGGAGACAATGTAGCATCAAAGCAGCCTCCTTTGCCGTCTCCTTTACGTTCTTCCAAATTCTTCCAGTCCAACCTGAGAATCCTGGTTACTGGAGGAGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGACAACTACTTCACCGGGTCAAAGGACAACCTAAAAAAATGGATCGGTCATCCAAGATTTGAACTTATACGTCATGATGTCACCGAGCCTTTATTGGTTGAGGTCGATCAGATCTATCATCTTGCATGCCCCGCTTCTCCTATTTTCTACAAATATAATCCTGTGAAGACCATAAAGACAAATGTGATTGGCACACTGAACATGCTTGGGCTTGCGAAGCGAGTTGGAGCAAGGATTTTGCTTACATCAACTTCAGAGGTATATGGGGATCCTCTTATCCATCCCCAACCTGAAAGCTATTGGGGCAATGTTAACCCTATCGGAGTCCGTAGCTGCTATGATGAAGGGAAACGTGTGGCTGAGACTTTGATGTTTGATTATCATAGGCAGCATGGGCTAGAAATTCGCATTGCAAGAATCTTCAACACATATGGACCACGCATGAATATCGATGATGGCCGTGTTGTCAGCAACTTCATTGCTCAAGCACTTCGTGGTGAATCCTTGACAGTCCAATCTCCCGGAACACAAACTCGTAGTTTCTGCTATGTCTCTGATCTGGTTGATGGCCTTATCCGTCTCATGGGAGGTTCAGACACTGGACCAATCAACCTTGGAAACCCAGGTGAATTTACAATGCTTGAACTTGCTGAGACAGTGAAGGAGCTTATTAATCCTGATGTGGAGATAAAGATAGTGGAGAACACTCCTGATGATCCAAGACAGAGAAAACCTGACATAACAAAAGCAAAGGAATTGCTTGGGTGGGAGCCACAGGTCAAATTGCGTGATGGTCTTCCTCTTATGGAACATGATTTCCGTTTGAGGCTTGGGGTTGGCAACAAGAATTAG 1038 0.4422 MAANSSNGDNVASKQPPLPSPLRSSKFFQSNLRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGESLTVQSPGTQTRSFCYVSDLVDGLIRLMGGSDTGPINLGNPGEFTMLELAETVKELINPDVEIKIVENTPDDPRQRKPDITKAKELLGWEPQVKLRDGLPLMEHDFRLRLGVGNKN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0335 345 Pfam GDP-mannose 4,6 dehydratase 35 329 IPR016040 -
Lal1g0335 345 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 1 345 - -
Lal1g0335 345 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 335 IPR036291 -
Lal1g0335 345 CDD UGD_SDR_e 33 336 - -
Lal1g0335 345 Gene3D - 31 337 - -
Lal1g0335 345 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 345 IPR044516 GO:0042732|GO:0048040|GO:0070403
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0335 Lal-Chr1 2017152 2021099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0335 16 328 Miscellaneous Gene Families AT4G00110 24.857 2.59e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0335 K08678 - gmx:100790835 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0335 1 2017152 2021099 Lal1g0335 1 2017152 2021099 ECH
Lal1g0335 1 2017152 2021099 Lal25g0150 25 946889 951653 ECH
Lal1g0335 1 2017152 2021099 Lal2g0240 2 1401210 1406406 LSH
Lal25g0150 25 946889 951653 Lal1g0335 1 2017152 2021099 PCT