Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0311 ATGTTGTCTGAATTGGGAAGAAGACCGATGCTTGGGAATAACGATGGTTCTTTTGGTGATGAATTAGAGAAGGAGATAGGGATGTTGCTCCGCGAGCAACATGGACAAGAAAGTGATGATCGTGAAAGAGAACTCAATATATTTAGGAGTGGATCAGCGCCTCCAACTGTGGAAGGTTCTTTGAATGCAGTTGGAGGATTGTTTAATAGTGATGCTGATGCTGTTACTGCTTCCTTATCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTTCATATTATTACTCCAATGTGAATTTGAATCCTAGACTTCCACCTCCTTTGTTATCAAAAGAGGATTGGAGGTTTGCTCAAAGGCTTAAAGGTGGAGGAGCTTCAGTTCTTGGTGGAATTGGAGATAGGAGGAAAGTGAACAGAACTGATGATAATAATGGTGGTAGATCGATGTTTGTGACTCCGCCCGGTTTTAACACGAGGAAACAAGAGAATGAAGTGGATAGTGAAAAAACAGGAGGCTCAGCTGAGTGGAGTGGTGATGGACTGATTGGTTTGCCTGGTCTAGGGCTTAGGAGCAAACAAAATAGCCTTGCTGAAAATTTTCAGGATGACATGGGGTGTAACACCTCTGTCACAGGCCTTCCTTCTCGCCCTGCCAGTCGTATTGCAATTGATGAAAATGCTGATGTCATTAGTTTTGTTGAAGCAGAGTTGGGTCATATACTCCGTGATTCCCCAACCACTGATGCTATCAAATCATCTGCAGCCCAAAACATTGGCCTGTCAGCTTCATATTCCTATGCCACTGCATTGGGAGGATCTTCTTTGTCAAGAAGCACTACTCCTGATCCACAAATTGTTGCTAGGGCTCCTAGTCCTTGTCCAACACCAATTGGTGGTGGGAGAACTCTTGTTGCGGACAAGAGAGGTGTTGCCAGTCCAGATTTATTTAATGGTGTTTCATCTGGCATCAATGATCCATCCGATCTTGTGGCTGCATTGTCGGGTATGAATCTGTCAAGAGAAGATATATTAGATGGTCAAAACCATTTGCCATCACAGGTCCAATCAGATGCTGGTAATCATCCAAGATATCTTTTCAGTATGCAAGGTGGTCAGGATCATGGCGAGCAACATTCATATTTAAAGAAGTCTGAATCTGGTAACATGCAAAATTCAAGCAAGACTAGTGGGAGTCGGCCAGACCTCACTAACCCATTTTTGGATAGGCGTGTTGAGCAACAACAATCTGATGTTCCTTCCCATAATTCCTATTTCAAAGGATCACTTTCCTCCAATTTTAATGGTGGAAGCAGTTTTTCTGCTCAGTACCAGCCTTTAGATGGAACAAATTCACCATTTACTAACTATGGCTTGAGTGGGTATGCTGGAAATCCAGCATTGGCATCCTGGATGACTAACCAACTTGGCACCGGTAATATGCCACCCCTCTATGAAAATGTTGTTGCAGCATCAGCTATGGCCAGCCGTGGAATGGACCCGAGAATTCTTGGTAAAATGGGAAATCAAATTGTGGGCAGTGGTCTTCAGTCTCCTTTTGTTGATCCCATGTATCTTCAATACTTGAGGACATCTGAGTATGCAGGATGGCTTGGTGCTCTTAATGACCCGTCCTCAGTGGACAGGAACTACTTAGGTAATTCATACATGCTTGAGCTTCAGAAAGCTCATCTTGGGTCTCTCCCCTCACCTCAGAAGTCTCAATACAATGTTCCACTGGGTGGTAAACCAGGCAGCTCCAATCATTATGGTTATTATGGCAATCTGGCATATGGTGTTGGGCTGTCTTACCCAGGAAGTCCAATGGCAAACTCTGCTGTATCTACTTCTCCAGCGGGATCTGGAAGTCCTATTAGGCACAATGAACCGAATACGCGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGCAATGGGACCTTGGCATGTAGATTCTAGGACCATGGATGAAAGCTTTGCTTCTTCTCTGCTGGGAGAGTTCAAAAACAATAAAACCAAGTGTTTTGATCTCTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCAGATCAATATGGAAGCCGATTTATTCAACAAAAGCTTGAAACAGCAACCATAGAAGAAAAAAACATGGTTTATCAAGAAATCATGCCATATGCTCTTTCTTTGATGACTGATGTGTTTGGGAATTACGTTGTTCAAAAGTTTTTTGAGCATGGACTTCCATCCCAGAGAAGAGAATTAGCCAAAGAGCTTGTAGGCCATGTTCTGAATCTCAGCCTTCAAATGTATGGTTGCCGAGTGATCCAAAAGGCCATCGAAGTTGTTGATTTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGAAGGTAATATCATCCGCTGTGTACGTGATCAGAATGGAAACCATGTCATTCAGAAGTGTATTGAATGCGTCCCTGAAGATGCAATCCAGTTTATTGTCTCAACTTTTTTTGATCAAGTTGTGACACTTTCAACCCATCCATATGGTTGCCGGGTGATTCAGAGAGTACTGGAACACTGCATAGACCCTACAACACAGCAGAAAGTTATGGATGAGGTTTTAGGTGCTGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTATGTTGTTCAGCATGTACTCGAACACGGGAAACCTCATGAGCGTTCGGCTATAATAAAGGAATTAGCAGGCAATATAGTTCAAATGAGTCAGCAAAAGTTTGCCTCTAATGTTGTAGAGAAATGTTTGAGCTTTGGAGGTCCTTCTGAACGACTACTACTAGTGAATGAGATGCTTGGGTCCACGGATGAAAATGAACCTCTTCAGGCCATGATGAAAGACCAATTTGCAAATTATGTAGTACAAAAGATGCTTGAAACATGTGAAGACCAACAACGTGATCTAATACTCTCACGAATTAAGGTTCATCTGAATGCATTGAAAAAGTACACCTATGGTAAACATATTGTCACACGTGTAGAGAAACTTGTTGCTGCTGGAGATTATGAAAATGGTGAGCTAGTTTATATGTTGGTCGTGACTGTACAAAAATGTTGCCATGTGGAGAAAGCTGTCCTTGTTTATTTAAGGGTACGGCTGGCTCTTGATTACTGCGCAGTGCAACAACCCCGGAACCAATTTCATGAGCACGAAATGGCTCAACTAGAACGCCCTCAAAGATCCCTCAGTGCTTCAAAAGCCCCACCTCAAACTATCCATACCATGGAACAACTCCTCCGAGGAGAAGGGTCTAAGCTGTCACCAACCCATTCTCCGGCCTACTTGACTTCATCGTCTTCCGCAAACTCATCTCACTTCACGAGAATGAAGAACCATGATGTGGAAGAAGGCCAGAATCAGAAGAAATCAGTTTTTACCAAAGTGAAGGAAAAGGCCAAGAAATTACGCCACAGCCTCAGTAAGAAAAAACATGATGATGGGAACACCACTAGTCCCTCATGGGGAGGCTTAGAAGATGATGGAGTAGAAGAAAATGCTGAATACTTTGGAGCTCCAATGTATGAATCTGAGAAGCTACATGAAGGATACATGGAAAATGCAAACCAACATTCAAGAGGAAGTCCAGTAATCCCTGAAGGATACAAAGAAAATGCAAGGCAGCAGCATCCAAGAGGAGGTCCACTAATATCTGAAAAACATGTTCTGTCAAGCCATGAAAAAGCTGAATTGGAACAAGATCGAGAAAAGTTGATAGGTCGTAACATGTCCAAGAAAACAGCTCAACCTTCCGCAACTGCAACCAAAACCGCAGCTGCCGCTGCTACTACCCTTCCTGGTGCAAACAAAAACTTAGCTGAGAAACTAACACCATCTAATGCTGAAGGATCATCAGAAGCAGCACATTCTATAGCTTCCAAAATTCAAGGCCTTTCTGTTTCCAAAACTGCTGAGCATCACACTCCATCATCATCATCATCATCATCATCAACAGCTGCAAATCCTAATAACACTTCTTTGTCCAATATTGCTGCTCCAAAGCCTCTTGTCAGGATGCACTCCACTGTTTCTTCAAGCGGACAACGAACTCCAGCAGCTCCAATGACTCCAGTAGCCTTACCTTCGTCTGCTCCGGCTGGAAGTAAGAATACCAACCCAACTTCGCAATTATGGGATAAGGCTGTTTCGGTGAAAGATTACTTGGTGAACAAGTTTGAGCCAGGAGAAGATGAGAAAGCACTGTCTCAGGTTATATCTGAAGCAGTGAGTCCTAGGAGAAACCCTGGCGATGTTGGAATAATGGAGAAGGTGAGAGAAGCTGTAACTTCTTTGCTCCGAACTGATGAACCCAAAAAACATGCAGACTCAACAATCACTACTCGTACTTCATCTCAAACACCATTACAAACCAACAACACTGCTCGTGCTTCATCTCAAATACCAGGGTCTACAAACAACACTACTCATGCTCCATTTCAAATTCCATTATCTACTAACAACACGACTCATGCTTCATCTCAAGTTCCAGTGTCTACCAACAACACTGCTCGTGCTTCGTCCAAGGCCCCAGAATCTACCAACATTAGTACCGCTCGTGCTTCATCTCAGGGATCAGTATCTGCCAACAGCTCTGCTCATGCTCCATCTCAATATCCAATATCTACATACCTGTGCACCACTCGTTCTTCATCTCAAAACCCAGCATCAACCAGAAACACTGCTCGTGCTTCATCTCAACTCCCGGTATCTACCAATGCTCAAGAAGTGTCTCAGGAAGAAAACCATGGCAGAATTCTTCAGCCAAATTGA 4770 0.4331 MLSELGRRPMLGNNDGSFGDELEKEIGMLLREQHGQESDDRERELNIFRSGSAPPTVEGSLNAVGGLFNSDADAVTASLSEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFAQRLKGGGASVLGGIGDRRKVNRTDDNNGGRSMFVTPPGFNTRKQENEVDSEKTGGSAEWSGDGLIGLPGLGLRSKQNSLAENFQDDMGCNTSVTGLPSRPASRIAIDENADVISFVEAELGHILRDSPTTDAIKSSAAQNIGLSASYSYATALGGSSLSRSTTPDPQIVARAPSPCPTPIGGGRTLVADKRGVASPDLFNGVSSGINDPSDLVAALSGMNLSREDILDGQNHLPSQVQSDAGNHPRYLFSMQGGQDHGEQHSYLKKSESGNMQNSSKTSGSRPDLTNPFLDRRVEQQQSDVPSHNSYFKGSLSSNFNGGSSFSAQYQPLDGTNSPFTNYGLSGYAGNPALASWMTNQLGTGNMPPLYENVVAASAMASRGMDPRILGKMGNQIVGSGLQSPFVDPMYLQYLRTSEYAGWLGALNDPSSVDRNYLGNSYMLELQKAHLGSLPSPQKSQYNVPLGGKPGSSNHYGYYGNLAYGVGLSYPGSPMANSAVSTSPAGSGSPIRHNEPNTRFASGMRNLAGAMGPWHVDSRTMDESFASSLLGEFKNNKTKCFDLSEIAGHVVEFSADQYGSRFIQQKLETATIEEKNMVYQEIMPYALSLMTDVFGNYVVQKFFEHGLPSQRRELAKELVGHVLNLSLQMYGCRVIQKAIEVVDLDQKIEMVQELEGNIIRCVRDQNGNHVIQKCIECVPEDAIQFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCIDPTTQQKVMDEVLGAVSMLAQDQYGNYVVQHVLEHGKPHERSAIIKELAGNIVQMSQQKFASNVVEKCLSFGGPSERLLLVNEMLGSTDENEPLQAMMKDQFANYVVQKMLETCEDQQRDLILSRIKVHLNALKKYTYGKHIVTRVEKLVAAGDYENGELVYMLVVTVQKCCHVEKAVLVYLRVRLALDYCAVQQPRNQFHEHEMAQLERPQRSLSASKAPPQTIHTMEQLLRGEGSKLSPTHSPAYLTSSSSANSSHFTRMKNHDVEEGQNQKKSVFTKVKEKAKKLRHSLSKKKHDDGNTTSPSWGGLEDDGVEENAEYFGAPMYESEKLHEGYMENANQHSRGSPVIPEGYKENARQQHPRGGPLISEKHVLSSHEKAELEQDREKLIGRNMSKKTAQPSATATKTAAAAATTLPGANKNLAEKLTPSNAEGSSEAAHSIASKIQGLSVSKTAEHHTPSSSSSSSSTAANPNNTSLSNIAAPKPLVRMHSTVSSSGQRTPAAPMTPVALPSSAPAGSKNTNPTSQLWDKAVSVKDYLVNKFEPGEDEKALSQVISEAVSPRRNPGDVGIMEKVREAVTSLLRTDEPKKHADSTITTRTSSQTPLQTNNTARASSQIPGSTNNTTHAPFQIPLSTNNTTHASSQVPVSTNNTARASSKAPESTNISTARASSQGSVSANSSAHAPSQYPISTYLCTTRSSSQNPASTRNTARASSQLPVSTNAQEVSQEENHGRILQPN 1589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0311 1589 MobiDBLite consensus disorder prediction 1432 1589 - -
Lal1g0311 1589 MobiDBLite consensus disorder prediction 127 177 - -
Lal1g0311 1589 ProSiteProfiles Pumilio RNA-binding repeat profile. 786 821 IPR001313 GO:0003723
Lal1g0311 1589 MobiDBLite consensus disorder prediction 1300 1331 - -
Lal1g0311 1589 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 658 998 IPR033133 GO:0003723
Lal1g0311 1589 Gene3D - 658 1003 IPR011989 -
Lal1g0311 1589 MobiDBLite consensus disorder prediction 1300 1375 - -
Lal1g0311 1589 CDD Pumilio 674 994 IPR033712 GO:0003723
Lal1g0311 1589 ProSiteProfiles Pumilio RNA-binding repeat profile. 931 972 IPR001313 GO:0003723
Lal1g0311 1589 MobiDBLite consensus disorder prediction 1084 1162 - -
Lal1g0311 1589 ProSiteProfiles Pumilio RNA-binding repeat profile. 750 785 IPR001313 GO:0003723
Lal1g0311 1589 Pfam Nucleic acid binding protein NABP 288 677 IPR012940 -
Lal1g0311 1589 MobiDBLite consensus disorder prediction 382 404 - -
Lal1g0311 1589 MobiDBLite consensus disorder prediction 1090 1108 - -
Lal1g0311 1589 ProSiteProfiles Pumilio RNA-binding repeat profile. 822 858 IPR001313 GO:0003723
Lal1g0311 1589 ProSiteProfiles Pumilio RNA-binding repeat profile. 895 930 IPR001313 GO:0003723
Lal1g0311 1589 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1006 - -
Lal1g0311 1589 ProSiteProfiles Pumilio RNA-binding repeat profile. 859 894 IPR001313 GO:0003723
Lal1g0311 1589 MobiDBLite consensus disorder prediction 1109 1127 - -
Lal1g0311 1589 MobiDBLite consensus disorder prediction 1188 1232 - -
Lal1g0311 1589 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1006 - -
Lal1g0311 1589 ProSiteProfiles Pumilio RNA-binding repeat profile. 678 713 IPR001313 GO:0003723
Lal1g0311 1589 MobiDBLite consensus disorder prediction 349 404 - -
Lal1g0311 1589 SUPERFAMILY ARM repeat 662 995 IPR016024 -
Lal1g0311 1589 MobiDBLite consensus disorder prediction 143 160 - -
Lal1g0311 1589 MobiDBLite consensus disorder prediction 1444 1589 - -
Lal1g0311 1589 Pfam Pumilio-family RNA binding repeat 797 820 IPR001313 GO:0003723
Lal1g0311 1589 Pfam Pumilio-family RNA binding repeat 826 861 IPR001313 GO:0003723
Lal1g0311 1589 Pfam Pumilio-family RNA binding repeat 754 787 IPR001313 GO:0003723
Lal1g0311 1589 Pfam Pumilio-family RNA binding repeat 945 974 IPR001313 GO:0003723
Lal1g0311 1589 Pfam Pumilio-family RNA binding repeat 720 751 IPR001313 GO:0003723
Lal1g0311 1589 Pfam Pumilio-family RNA binding repeat 682 716 IPR001313 GO:0003723
Lal1g0311 1589 Pfam Pumilio-family RNA binding repeat 899 933 IPR001313 GO:0003723
Lal1g0311 1589 Pfam Pumilio-family RNA binding repeat 865 896 IPR001313 GO:0003723
Lal1g0311 1589 SMART pum_5 822 858 IPR001313 GO:0003723
Lal1g0311 1589 SMART pum_5 937 972 IPR001313 GO:0003723
Lal1g0311 1589 SMART pum_5 714 749 IPR001313 GO:0003723
Lal1g0311 1589 SMART pum_5 750 785 IPR001313 GO:0003723
Lal1g0311 1589 SMART pum_5 859 894 IPR001313 GO:0003723
Lal1g0311 1589 SMART pum_5 786 821 IPR001313 GO:0003723
Lal1g0311 1589 SMART pum_5 678 713 IPR001313 GO:0003723
Lal1g0311 1589 SMART pum_5 895 930 IPR001313 GO:0003723
Lal1g0311 1589 ProSiteProfiles Pumilio RNA-binding repeat profile. 714 749 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0311 Lal-Chr1 1883232 1892017 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0311 K17943 - gmx:100787039 1565.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0311 1 1883232 1892017 Lal1g0311 1 1883232 1892017 ECH
Lal1g0311 1 1883232 1892017 Lal2g0211 2 1246083 1248057 LSH
Lal25g0405 25 2750863 2751851 Lal1g0311 1 1883232 1892017 PCT
Lal10g1042 10 17502517 17507608 Lal1g0311 1 1883232 1892017 PCT
Lal1g0311 1 1883232 1892017 Lal25g0405 25 2750863 2751851 PCT
Lal1g0311 1 1883232 1892017 Lal10g1042 10 17502517 17507608 PCT