Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0187 ATGGATTTGGTTGTGAGCATGCTTGCTCTTATTCTTGTTAGCTCATTCACAGATGCGGGTAGTTCACCCACTCTCGACATTGGTTTCCTCAACCGGAGCAGCTTCCCTGCAGGTTTCATCTTTGGGGCAGGATCTTCTGCATTCCAGTTCGAAGGTGCTGCAAGAGAAGGGGGTAAAGGACCAAGTATTTGGGATACCTACACCCATAAGTATCCAGAGAAGATAAGGGATGGGAGCAATGGAGATGTTGCTGTAGACCAATATCACCGTTACAAGGAGGATGTTGGGATCATGAAGGATATGAATTTGGATTCATATAGATTCTCCATCTCATGGCCCAGAATACTGCCAAGTATTAAGCCATTTGTGACTCTTTTCCATTGGGATCTCCCCCAAGCATTGGAAGATGAGTATGGTGGTTTCTTGAGCTCTCGCATAGTAAATGATTTTCAAGACTATGCGGATATTTGCTTCCAAGAATATGGAAAAAAGGTTAAGTTATGGACTACATTGAATGAACCACTTATGTATAGTAGAGGTGGCTATGCACTTGGGACATTTGCACCAGGTCGATGTTCTGATTGGATGAAGTTAAATTGCACCGGTGGTGATTCAAGCACAGAACCTTATATAGTTACTCATAATCTAATTCTTGCTCATGCTGCTGCTGTGCACGTTTACAGAACTAAGTATCAGGCAATTCAAAAAGGTAAGATAGGCATAACTTTAGTATCAAACTGGTTCATACCTCTCTCAGACAATGACACTCGTGATATTAAGGCTGCTAGAAGATCTCTTGACTTCCAATATGGATGGTACATGGAACCTCTAACAAAAGGATACTATCCAGAAAACATGCGAGCCTTGGTGAGAAAGCGATTGCCAAAGTTCACTTCAGAGCAAGCTAAGCTAGTGAATGGTTCATTTGATTTTATTGGTCTTAACTATTACTCCTCTAGTTATGCCTCTCCAGCACCACGAACCAATGGAAAACCCAGTTACCAAACAGATTATCTGGCCAATTCTTTGTTTGAGCGCAATGATAGACCACTAGGTCTAAGGGCCGCTTCAAATTGGATATATTTTTATCCAAAGGGACTTCGAGATATTTTGATATACACCAAGAACAAATACAACAACCCATTGATTTACATCACAGAAAATGGTATGAATGAGTTCAATGATCCAACCTTGTCACTAGATGAAGCTCTTGTAGATACTTACAGAATTGATTATATTTATCGTCATCTCTTTTATCTTCGATATGCAATTGAGGAGCATGGGGTGAATGTAAAGGGATATTATCCATGGTCATTTTTGGATGATCATGAATGGTCTTCAGGATTTACTGTGAGGTTTGGAATGGTTTTTGTGGATTTCAAAAATGGCTTGAAAAGGCACCCAAAGGTTTCTGCCATGTGGTACAAGAACTTCCTCAACAAATATTAG 1449 0.4037 MDLVVSMLALILVSSFTDAGSSPTLDIGFLNRSSFPAGFIFGAGSSAFQFEGAAREGGKGPSIWDTYTHKYPEKIRDGSNGDVAVDQYHRYKEDVGIMKDMNLDSYRFSISWPRILPSIKPFVTLFHWDLPQALEDEYGGFLSSRIVNDFQDYADICFQEYGKKVKLWTTLNEPLMYSRGGYALGTFAPGRCSDWMKLNCTGGDSSTEPYIVTHNLILAHAAAVHVYRTKYQAIQKGKIGITLVSNWFIPLSDNDTRDIKAARRSLDFQYGWYMEPLTKGYYPENMRALVRKRLPKFTSEQAKLVNGSFDFIGLNYYSSSYASPAPRTNGKPSYQTDYLANSLFERNDRPLGLRAASNWIYFYPKGLRDILIYTKNKYNNPLIYITENGMNEFNDPTLSLDEALVDTYRIDYIYRHLFYLRYAIEEHGVNVKGYYPWSFLDDHEWSSGFTVRFGMVFVDFKNGLKRHPKVSAMWYKNFLNKY 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0187 482 Pfam Glycosyl hydrolase family 1 118 480 IPR001360 GO:0004553|GO:0005975
Lal9g0187 482 SUPERFAMILY (Trans)glycosidases 25 480 IPR017853 -
Lal9g0187 482 ProSitePatterns Glycosyl hydrolases family 1 active site. 383 391 IPR018120 -
Lal9g0187 482 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 119 481 - -
Lal9g0187 482 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 3 118 - -
Lal9g0187 482 PANTHER GLYCOSYL HYDROLASE 119 481 IPR001360 GO:0004553|GO:0005975
Lal9g0187 482 PANTHER GLYCOSYL HYDROLASE 3 118 IPR001360 GO:0004553|GO:0005975
Lal9g0187 482 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 39 53 IPR033132 -
Lal9g0187 482 Gene3D Glycosidases 20 481 - -
Lal9g0187 482 PRINTS Glycosyl hydrolase family 1 signature 308 322 IPR001360 GO:0004553|GO:0005975
Lal9g0187 482 PRINTS Glycosyl hydrolase family 1 signature 383 391 IPR001360 GO:0004553|GO:0005975
Lal9g0187 482 PRINTS Glycosyl hydrolase family 1 signature 406 417 IPR001360 GO:0004553|GO:0005975
Lal9g0187 482 PRINTS Glycosyl hydrolase family 1 signature 428 445 IPR001360 GO:0004553|GO:0005975
Lal9g0187 482 PRINTS Glycosyl hydrolase family 1 signature 452 464 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0187 Lal-Chr9 1168252 1174368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0187 3 475 Glycoside Hydrolase AT5G42260 49.800 6.20e-176 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0187 - K01188 gmx:778162 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0187 9 1168252 1174368 Lal9g0187 9 1168252 1174368 ECH
Lal1g0290 1 1722957 1727176 Lal9g0187 9 1168252 1174368 LSH