Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0278 ATGGCTTCCAACAACGCTCTCCCCGCCACCGGTAAAGGCCTCATCATCAGCTTCGGCGAGATGCTCATCGACTTCGTCCCCACCACCTCCGGCGTCTCCCTCGCTGAGGCTCCTGGCTTCCTTAAAGCTCCCGGCGGTGCCCCTGCTAACGTCGCCATCGCCGTCGCTCGCCTCGGTGGCAAATCCGCCTTCGTTGGAAAACTGGGTGATGATGAGTTCGGCCACATGCTCGCCGGAATCTTGAAGGAGAACGACGTGAATGCCGATGGCATTACCTTCGATGAAGGCGCGAGAACTGCTCTAGCCTTCGTGACCCTACGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGAAACCCAAGTGCCGATATGCTCTTGAAGCCTGAAGATCTCAATCTTGAACTTATCAGATCTGCAAAAATATTCCATTATGGATCCATAAGCTTGATAGTGGAGCCATGTAGATCGGCACATTTGAAGGCATTGGAAGTGGCCAAGGAGGCAGGGTCACTACTCTCTTATGATCCAAACCTCAGGTTACCCTTATGGCCCTCGCCTAAGGAAGCTCGAGAGCAAATTCTCAGCATATGGGACAAGGCTGATATCATCAAGATCAGTGATGTGGAGCTTGAATTCCTTACTGGAAAAGTTGATGATGCTTCTGCTCTCTCCTTGTGGCACCCCAATTTGAAGTTACTCCTTGTCACTCTTGGTGAAGATGGTTCCAAATACTATACCAAGAATTTCCATGGATCAGTGGATGCTTTTCATGTTAAAACAGTGGATACAACTGGCGCGGGTGATTCCTTTATTGGTGCTCTACTCTCCAAAATCGTTGATGATCAATCCATACTTGAAGATGAAGCAAGGTTAAGGGAAGTACTGAAGTTTGCAAATGCAACTGGAGCAATTACAACTACTAAGAAGGGAGCAATCCCTGCTCTTCCCACAGAGCCTGATGTTCTCAATCTGATTAAACAAGCATAG 987 0.4924 MASNNALPATGKGLIISFGEMLIDFVPTTSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKSAFVGKLGDDEFGHMLAGILKENDVNADGITFDEGARTALAFVTLRADGEREFMFYRNPSADMLLKPEDLNLELIRSAKIFHYGSISLIVEPCRSAHLKALEVAKEAGSLLSYDPNLRLPLWPSPKEAREQILSIWDKADIIKISDVELEFLTGKVDDASALSLWHPNLKLLLVTLGEDGSKYYTKNFHGSVDAFHVKTVDTTGAGDSFIGALLSKIVDDQSILEDEARLREVLKFANATGAITTTKKGAIPALPTEPDVLNLIKQA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0278 328 PANTHER HEXOKINASE FAMILY MEMBER 20 322 - -
Lal1g0278 328 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 262 275 IPR002173 GO:0016773
Lal1g0278 328 CDD bac_FRK 14 312 - -
Lal1g0278 328 PANTHER BNAA04G18320D PROTEIN 20 322 - -
Lal1g0278 328 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Lal1g0278 328 PRINTS Ribokinase signature 233 244 IPR002139 GO:0016301
Lal1g0278 328 Gene3D - 12 328 IPR029056 -
Lal1g0278 328 Pfam pfkB family carbohydrate kinase 14 317 IPR011611 -
Lal1g0278 328 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016773
Lal1g0278 328 SUPERFAMILY Ribokinase-like 15 325 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0278 Lal-Chr1 1629059 1632925 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0278 K00847 - gmx:100780082 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0278 1 1629059 1632925 Lal2g0175 2 1041723 1045638 LSH
Lal10g1070 10 17683898 17688184 Lal1g0278 1 1629059 1632925 PCT
Lal1g0278 1 1629059 1632925 Lal10g1070 10 17683898 17688184 PCT