Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0170 ATGGCCATTCAAGCTCAGTTTTACCACACCAATGGTGAGTCTTATCCATTTTCTGACAATGGTTTTTATGCATCTGGCCTCACAGATTCATGTTTCAATCACCAACAGATACATCATCAGCAGCAGCAGCAGCAGCTACAACAATTGCAACAACGTTTACAACAGCCATGTAATGAGACCCATAACAACCTTGTTGATCAAAATCTTATTTTTCATGATTCAATACCTTTGAATCCTCCTACCTCTCTTTTTCAGTTTGAAGATATTCATCAGTACATCAGATTACAGAACGAGAAATTAAGATTTATGGTACAAGAACAAGGGAAGCAACAAATATCAGCATTACTGAATAGAGTGGAATCTGATTCGTTTAAACTCCTGAAGCAAAAAGATGAAGAGATTGCAAAGGCTACAAGAAAAAAGGTGGAATTGGAAGATTTTATAAAAAGACTAGAAGCAGAGAATGAAGGGTGGCAAAAGATGGTTCAGGAAAACGAAGCAATGACATTATCTCTGTACAAAACATTGGAGGAGATGAAAGAAAAAGAAAAAGCATCCTATAACACGAATATGATTATGGCAGATGATGCAGAATCATGGTGTAACGAAATGAGAAGAGAGAAAGAAGAAGGAATAGTAGGGGAAAATAATAGAATAGGAGTTGAGATGGAACATATAACGAGGGAGATGATGGTTTGCAAAAGCTGTAATTCTGGGAGGTCGTGCTTTTTGTTCCTCCCATGCAGGCACCTTTGTTCATGCAAAGTTTGTGATGCTTTACTTAAGGCTTGCCCTGTCTGCACAATGCCAAAGAAAGCTAGCATTGAAACTTTAATTTAA 840 0.375 MAIQAQFYHTNGESYPFSDNGFYASGLTDSCFNHQQIHHQQQQQQLQQLQQRLQQPCNETHNNLVDQNLIFHDSIPLNPPTSLFQFEDIHQYIRLQNEKLRFMVQEQGKQQISALLNRVESDSFKLLKQKDEEIAKATRKKVELEDFIKRLEAENEGWQKMVQENEAMTLSLYKTLEEMKEKEKASYNTNMIMADDAESWCNEMRREKEEGIVGENNRIGVEMEHITREMMVCKSCNSGRSCFLFLPCRHLCSCKVCDALLKACPVCTMPKKASIETLI 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0170 279 Coils Coil 32 59 - -
Lal1g0170 279 PIRSF SBP1_RNase_bind 24 279 IPR017066 -
Lal1g0170 279 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 279 - -
Lal1g0170 279 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 279 IPR017066 -
Lal1g0170 279 Coils Coil 127 168 - -
Lal1g0170 279 Pfam Zinc finger, C3HC4 type (RING finger) 232 271 - -
Lal1g0170 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 278 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0170 Lal-Chr1 1069680 1073056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0170 232 267 Miscellaneous Gene Families AT2G21380 41.667 9.80e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0170 K19042 - gmx:100789863 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0170 1 1069680 1073056 Lal1g0170 1 1069680 1073056 ECH
Lal1g0170 1 1069680 1073056 Lal2g0102 2 644339 645796 LSH
Lal1g0170 1 1069680 1073056 Lal9g0126 9 833401 834804 LSH