Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0139 ATGCCTCATATTATGAGTTCCTTCTTTCTGCTTTGTGTTATTCTTTTCACAGGTGCCACCACAGGTTTTGAAGTCAAAGCTGTACCCTACGATTACTCTGCCATAAGTGAATGTTTGCAACAACCTCTGAAGCCTCAATATAATGGAGGACTCATCAAAAACCCAGAACTGAACAATGGACTAGAAGGGTGGACTGTATATGGAAATGCAAAAATAGAACATAGAGAATCATCAGGCAACAAATATGTTGTAGCCTATAACAGGAACCAATCTTCAGATACTGTTTCCCAAAAGATTAACCTGCAAAAGGGGATGCATTATACTCTATCTGGTTGGTTACAAGTGACTGGGAGCAATGTTCTAGTAAAAGCAACACTCAAAACAAACAAAGGGTATACCCTTGCTGGTGCCACTTATGCTGAGTCAAATTGCTGGTCTATGATTAAGGGTGGTTTTACAGCAGATACATCAGGACCAGCTGAGCTCTATTTTGAGAGCAAAGATACATCTGTGGATATTTGGGTTGACAACTTGTCCTTACAACCATTCACAGAAGAGGAATGGAAGTCTCATCATGTTGAGAGTATTGAGAAGGCACGCAAGAGGAAAGTATTACTGAAAGTAGCTTATAAACAAGGGAGTCCGGTTGGAAATGCGACCATATCTATTAAACAGAAGAGGTCAGGGTTTCCATTTGGAAGTGCCATAAACAGTAACATCCTGCAGAACACTGCATACCAAAACTGGTTCACTTCTAGGTTCACAGTTACCACATTTGCAAATGAAATGAAGTGGTATAGCACCGAATCTGTACAAGGGAAGGAGAACTATGCAGTTGCTGATTCCATGTTACAGTTCGCGCAGAAACACAACATTGCTGTTAGAGGCCACTGTGTATTTTGGGATGATCCTAAGTACCAACCTAGTTGGGTTCCTTCACTCTCCTCAGACCAACTTAATTCAGCAGTTCAAAAGAGGATTCAATCTGTTGTAACAAGATACAAGGACAAACTAATTGGATGGGATGTTGTTAATGAAAACCTTCACTTTTCATTCTTCGAAAGTAAACTTGGACAACAATTTTCATCCAAGGTTTTCAGTGTGGTTCACAAAATTGATCCAAGAGTCACTTTATTCTTGAATGAATATAATACGATCGAAGACCAGAGAGACGGTTCAGTAAATGCGGCAAACTACATTAAGAAGCTCAGAGAGATCCAAAGCTACCCCACGGCTAAGGGAGTCAAAATTGGGATTGGTCTTGAATCTCATTTCAGTTTTGCTCCAAACCTGCCTTACATGAGATCTTCCATTGATATGCTTGCCTCCACTGGGTCACCTATTTGGATTACCGAAATAGATGTTGCAAACCAACCGAAGCAGGCAGAGTACTTTGAACAGGTTTTAAGAGAAGCACACTCTCATCCAAAGGTGCAAGGCATTGTAATGTGGACAGCATGGTCACCAAATGGTGATTGCTATAAGATTTGCCTAGTTGATAAAAACTTCAAAAACTTGCCTGGAGGGAATGTTGTGGACAAATTGCTTCGTGAGTGGGGTTCTAAAAAAGTATCAGGGATTACAAACCACAATGGGACACATGAGGTGACCCTTTTCCATGGTGACTATGAAGTCACAATCACTGACCCTGCCAACAAGGATTACCACTTCACTCAGAAAGTGCAAGTGCTTCCAGAAGATCAACCAGAGGAAACAACAACTCAAGTGCTTCAACCAGAAAAACCAAAGGAAACAACAACTCAAGTTATAGAAATTTCTATTTAG 1785 0.4067 MPHIMSSFFLLCVILFTGATTGFEVKAVPYDYSAISECLQQPLKPQYNGGLIKNPELNNGLEGWTVYGNAKIEHRESSGNKYVVAYNRNQSSDTVSQKINLQKGMHYTLSGWLQVTGSNVLVKATLKTNKGYTLAGATYAESNCWSMIKGGFTADTSGPAELYFESKDTSVDIWVDNLSLQPFTEEEWKSHHVESIEKARKRKVLLKVAYKQGSPVGNATISIKQKRSGFPFGSAINSNILQNTAYQNWFTSRFTVTTFANEMKWYSTESVQGKENYAVADSMLQFAQKHNIAVRGHCVFWDDPKYQPSWVPSLSSDQLNSAVQKRIQSVVTRYKDKLIGWDVVNENLHFSFFESKLGQQFSSKVFSVVHKIDPRVTLFLNEYNTIEDQRDGSVNAANYIKKLREIQSYPTAKGVKIGIGLESHFSFAPNLPYMRSSIDMLASTGSPIWITEIDVANQPKQAEYFEQVLREAHSHPKVQGIVMWTAWSPNGDCYKICLVDKNFKNLPGGNVVDKLLREWGSKKVSGITNHNGTHEVTLFHGDYEVTITDPANKDYHFTQKVQVLPEDQPEETTTQVLQPEKPKETTTQVIEISI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0139 594 SUPERFAMILY (Trans)glycosidases 215 522 IPR017853 -
Lal1g0139 594 PANTHER GLYCOSYL HYDROLASE 20 572 IPR044846 GO:0004553|GO:0005975
Lal1g0139 594 SMART glyco_10 263 516 IPR001000 GO:0004553|GO:0005975
Lal1g0139 594 Pfam Glycosyl hydrolase family 10 228 485 IPR001000 GO:0004553|GO:0005975
Lal1g0139 594 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 217 515 IPR001000 GO:0004553|GO:0005975
Lal1g0139 594 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 445 455 IPR031158 -
Lal1g0139 594 Pfam Carbohydrate binding domain 51 167 IPR003305 GO:0016798
Lal1g0139 594 SUPERFAMILY Galactose-binding domain-like 49 181 IPR008979 -
Lal1g0139 594 Gene3D Glycosidases 217 530 - -
Lal1g0139 594 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 20 572 - -
Lal1g0139 594 Gene3D - 39 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0139 Lal-Chr1 911240 917630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0139 24 558 Glycoside Hydrolase AT4G33840 58.965 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0139 - - gmx:100775272 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0139 1 911240 917630 Lal1g0139 1 911240 917630 ECH
Lal1g0139 1 911240 917630 Lal2g0086 2 522815 525388 LSH
Lal1g0139 1 911240 917630 Lal9g0110 9 698888 701424 LSH